ChIPseqScore            Calculate read-enrichment scores for each
                        nucleotide position
CSAR-package            Statistical tools for the analysis of ChIP-seq
                        data
distance2Genes          Calculate relative positions of read-enriched
                        regions regarding gene position
genesWithPeaks          Provide table of genes with read-enriched
                        regions, and their location
getPermutatedWinScores
                        Obtain the read-enrichment score distribution
                        under the null hypothesis
getThreshold            Calculate the threshold value corresponding to
                        control FDR at a desired level
loadMappedReads         Load mapped reads
mappedReads2Nhits       Calculate number of overlapped extended reads
                        per nucleotide position
permutatedWinScores     Calculate scores for permutated read-enriched
                        regions
sampleSEP3_test         Partial dataset of a ChIP-seq experiment
score2wig               Save the read-enrichment scores at each
                        nucleotide position in a .wig file format
sigWin                  Calculate regions of read-enrichment
