BarcodeObj-class        BarcodeObj object
bc_2df                  Transforms BarcodeObj object into another data
                        type
bc_auto_cutoff          Finds barcode count cutoff point
bc_barcodes             Gets barcode sequences
bc_cleanBc              Accesses cleanBc slot in the BarcodeObj object
bc_create_BarcodeObj    Create a BarcodeObj object from extracted
                        barcodes data
bc_cure_cluster         Clean barcodes by editing distance
bc_cure_depth           Filters barcodes by counts
bc_cure_umi             Filters UMI-barcode tag by counts
bc_extract              Extract barcode from sequences
bc_extract_sc_fastq     Extract barcode from single-cell sequencing
                        fastq file
bc_extract_sc_sam       Extract barcode from single-cell sequencing sam
                        file
bc_messyBc              Accesses messyBc slot in the BarcodeObj object
bc_meta                 Accesses and sets metadata in BarcodeObj object
bc_names                Access & update sample names in BarcodeObj &
                        and BarcodeQcSet
bc_obj                  A dummy BarcodeObj object
bc_plot_count           Plot for counts distribution
bc_plot_mutual          Barcode read count 2D scatter plot of sample
                        combination
bc_plot_pair            Barcode read count 2D scatter plot for given
                        pairs
bc_plot_single          Scatter plot of barcode count distribution per
                        sample
bc_seq_filter           Remove low-quality sequence
bc_seq_qc               Evaluates sequences quality
bc_splitVDJ             Parse VDJ recombination (experimental)
bc_subset               Manages barcodes and samples in a BarcodeObj
                        object
bc_summary_barcode      Summary and evaluate barcode diversity
bc_summary_seqQc        Summary barcodeQcSet
CellBarcode             DNA Barcode Analysis toolkit
format,BarcodeObj-method
                        Formats BarcodeObj object
parse_10x_sam           Parse 10X bam file
seq_correct             Sequence clustering
show,BarcodeObj-method
                        Show BarcodeObj object
subset,BarcodeQcSet-method
                        Subset the BarcodeQcSet
