Package: CytoML
Type: Package
Title: A GatingML Interface for Cross Platform Cytometry Data Sharing
Version: 2.24.0
Date: 2016-04-15
Author: Mike Jiang, Jake Wagner
Maintainer: Mike Jiang <mike@ozette.com>
Description: Uses platform-specific implemenations of the GatingML2.0
        standard to exchange gated cytometry data with other software
        platforms.
License: AGPL-3.0-only
License_restricts_use: no
Imports: cytolib(>= 2.3.10), flowCore (>= 1.99.10), flowWorkspace (>=
        4.1.8), openCyto (>= 1.99.2), XML, data.table, jsonlite, RBGL,
        Rgraphviz, Biobase, methods, graph, graphics, utils, jsonlite,
        dplyr, grDevices, methods, ggcyto (>= 1.11.4), yaml, stats,
        tibble
biocViews: ImmunoOncology, FlowCytometry, DataImport,
        DataRepresentation
LinkingTo: cpp11, BH(>= 1.62.0-1), RProtoBufLib, cytolib, Rhdf5lib,
        flowWorkspace
Suggests: testthat, flowWorkspaceData , knitr, rmarkdown, parallel
VignetteBuilder: knitr
RoxygenNote: 7.2.3
BugReports: https://github.com/RGLab/CytoML/issues
URL: https://github.com/RGLab/CytoML
Collate: 'AllClasses.R' 'GatingSet2cytobank.R' 'GatingSet2flowJo.R'
        'gate-methods.R' 'compensation.R' 'cpp11.R'
        'cytobank2GatingSet.R' 'cytobankExperiment.R'
        'cytolibml_bin_path.R' 'flowJoWorkspace_Methods.R'
        'diva2GatingSet.R' 'flowUtils_functions.R' 'gatingML.R'
        'read.gatingML.cytobank.R' 'graphGML_methods.R'
        'helperFunctions.R' 'parameter-methods.R' 'transforms.R'
        'utils.R' 'writeGatingML.R'
SystemRequirements: xml2, GNU make, C++17
Encoding: UTF-8
Config/pak/sysreqs: make libjpeg-dev libpng-dev libxml2-dev zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2026-04-28 12:43:46 UTC
RemoteUrl: https://github.com/bioc/CytoML
RemoteRef: RELEASE_3_23
RemoteSha: 14a81f1e3e7882d49a0fb78010be6d667f7cd9ee
NeedsCompilation: yes
Packaged: 2026-04-29 16:24:22 UTC; root
Depends: R (>= 3.5.0)
Built: R 4.6.0; x86_64-apple-darwin20; 2026-04-29 16:30:32 UTC; unix
