clusterPro_res          'clusterPro_res'
dd_list_original        dd_list_original
de_limma                A sample 'MArrayLM' object
de_named_list           de_named_list
DeeDeeExperiment-class
                        The DeeDeeExperiment class
DeeDeeExperiment-methods
                        Methods for DeeDeeExperiment objects
DeeDeeExperiment-misc   Miscellaneous DeeDeeExperiment methods
DeeDeeExperiment-pkg    DeeDeeExperiment
dge_exact_IFNg_both     A sample 'DGEExact' object
dge_exact_IFNg_naive    A sample 'DGEExact' object
dge_exact_Salm_both     A sample 'DGEExact' object
dge_exact_Salm_naive    A sample 'DGEExact' object
dge_lrt_IFNg_both       A sample 'DGELRT' object
dge_lrt_IFNg_naive      A sample 'DGELRT' object
dge_lrt_Salm_both       A sample 'DGELRT' object
dge_lrt_Salm_naive      A sample 'DGELRT' object
enrichr_res             'enrichr_res'
export_result_for_dde   Export DEA/FEA/ASSAY results from a
                        'DeeDeeExperiment' to excel files
fgseaRes                'fgseaRes'
gost_res                'gost_res'
gsea_res                'gsea_res'
IFNg_both               A sample 'DESeqResults' object
IFNg_naive              A sample 'DESeqResults' object
limma_list_for_dde      Convert a 'MArrayLM' object with multiple
                        contrasts into a list of DE results tables
                        compatible with DeeDeeExperiment
muscat_list_for_dde     Convert 'muscat::pbDS()' results into a flat
                        list of data frames compatible with
                        'DeeDeeExperiment'
muscat_res              'muscat_res'
Salm_both               A sample 'DESeqResults' object
Salm_naive              A sample 'DESeqResults' object
supported_fea_formats   Display available FEA formats
topGO_results_list      'topGO_results_list'
