# Generated by roxygen2: do not edit by hand

export("getDEAInfo<-")
export("getFEAInfo<-")
export(DeeDeeExperiment)
export(addDEA)
export(addFEA)
export(addScenarioInfo)
export(export_result_for_dde)
export(getDEA)
export(getDEAInfo)
export(getDEAList)
export(getDEANames)
export(getFEA)
export(getFEAInfo)
export(getFEAList)
export(getFEANames)
export(limma_list_for_dde)
export(linkDEAandFEA)
export(muscat_list_for_dde)
export(removeDEA)
export(removeFEA)
export(renameDEA)
export(renameFEA)
export(supported_fea_formats)
exportClasses(DeeDeeExperiment)
exportMethods("getDEAInfo<-")
exportMethods("getFEAInfo<-")
exportMethods(addDEA)
exportMethods(addFEA)
exportMethods(addScenarioInfo)
exportMethods(getDEA)
exportMethods(getDEAInfo)
exportMethods(getDEAList)
exportMethods(getDEANames)
exportMethods(getFEA)
exportMethods(getFEAInfo)
exportMethods(getFEAList)
exportMethods(getFEANames)
exportMethods(linkDEAandFEA)
exportMethods(removeDEA)
exportMethods(removeFEA)
exportMethods(renameDEA)
exportMethods(renameFEA)
exportMethods(show)
exportMethods(summary)
importClassesFrom(SingleCellExperiment,SingleCellExperiment)
importClassesFrom(SummarizedExperiment,RangedSummarizedExperiment)
importFrom(DESeq2,DESeq)
importFrom(DESeq2,results)
importFrom(DESeq2,vst)
importFrom(S4Vectors,"metadata<-")
importFrom(S4Vectors,DataFrame)
importFrom(S4Vectors,SimpleList)
importFrom(S4Vectors,metadata)
importFrom(S4Vectors,setValidity2)
importFrom(SingleCellExperiment,"int_colData<-")
importFrom(SingleCellExperiment,"int_metadata<-")
importFrom(SingleCellExperiment,SingleCellExperiment)
importFrom(SingleCellExperiment,int_colData)
importFrom(SingleCellExperiment,int_metadata)
importFrom(SummarizedExperiment,"colData<-")
importFrom(SummarizedExperiment,"rowData<-")
importFrom(SummarizedExperiment,assay)
importFrom(SummarizedExperiment,assays)
importFrom(SummarizedExperiment,colData)
importFrom(SummarizedExperiment,mcols)
importFrom(SummarizedExperiment,rowData)
importFrom(cli,cli_alert_info)
importFrom(cli,cli_alert_success)
importFrom(edgeR,topTags)
importFrom(limma,topTable)
importFrom(methods,as)
importFrom(methods,callNextMethod)
importFrom(methods,is)
importFrom(methods,new)
importFrom(methods,show)
importFrom(methods,validObject)
importFrom(stats,na.omit)
importFrom(stats,setNames)
importFrom(utils,packageVersion)
importFrom(writexl,write_xlsx)
