# Generated by roxygen2: do not edit by hand

export(annotateNodes)
export(createRandomNodes)
export(detectNodes)
export(enrichmentAnalysis)
import(GO.db)
importClassesFrom(AnnotationDbi,OrgDb)
importClassesFrom(GenomicFeatures,TxDb)
importClassesFrom(GenomicRanges,GRanges)
importClassesFrom(GenomicRanges,GRangesList)
importClassesFrom(S4Vectors,Hits)
importClassesFrom(S4Vectors,Pairs)
importClassesFrom(graph,graphNEL)
importFrom(Seqinfo,seqlevels)
importFrom(GenomicRanges,GRangesList)
importFrom(GenomicRanges,seqnames)
importFrom(RBGL,connectedComp)
importFrom(S4Vectors,SimpleList)
importFrom(S4Vectors,queryHits)
importFrom(S4Vectors,subjectHits)
importFrom(graph,ugraph)
importFrom(methods,is)
importFrom(methods,new)
importFrom(stats,p.adjust)
importFrom(stats,phyper)
importFrom(stats,ppois)
importMethodsFrom(AnnotationDbi,Definition)
importMethodsFrom(AnnotationDbi,Term)
importMethodsFrom(AnnotationDbi,mappedkeys)
importMethodsFrom(AnnotationDbi,select)
importMethodsFrom(GenomicFeatures,genes)
importMethodsFrom(GenomicFeatures,promoters)
importMethodsFrom(IRanges,"width<-")
importMethodsFrom(IRanges,findOverlaps)
importMethodsFrom(IRanges,reduce)
importMethodsFrom(IRanges,shift)
importMethodsFrom(IRanges,trim)
importMethodsFrom(S4Vectors,"mcols<-")
importMethodsFrom(S4Vectors,first)
importMethodsFrom(S4Vectors,mcols)
importMethodsFrom(S4Vectors,second)
