array_preprocess        Preprocess of Microarray data
cal_mean_module         Find the mean value of the gene in each module
cluster_array           cluster probes of Microarray data
combine_pvalue          combine pvalues of SNP difference analysis
                        result
countToFpkm             Convert count to FPKM
countToTpm              Convert count to Tpm
differential_array      Differential analysis of Microarray data
differential_CNV        Do difference analysis of gene level copy
                        number variation data
differential_limma      differential_limma
differential_methy      differential_methy
differential_RNA        differential_RNA
differential_SNP        Do difference analysis of SNP data
differential_SNP_GEO    Do difference analysis of SNP data downloaded
                        from GEO
differential_SNP_tcga   Do difference analysis of SNP data downloaded
                        from TCGAbiolinks
fpkmToTpm               Convert fpkm to Tpm
gene_ave                Average the values of same genes in gene
                        expression profile
gene_cov                a data.frame of gene length and GC content
geneExpress             a data.frame of gene expression data
get_geo_array           Get Microarray matrix data from GEO
GSE66705_sample2        a matrix of gene expression data in GEO
id_conversion_TCGA      Convert ENSEMBL gene id to gene Symbol in TCGA
kegg_liver              a matrix of gene expression data in TCGA
Merge_methy_tcga        Merge methylation data downloaded from TCGA
module                  a matrix of module name, gene symbols, and the
                        number of gene symbols
prepare_chi             Preparer file for chi-square test
profile                 a matrix of gene expression data in TCGA
repAssign               Handle the case where one id corresponds to
                        multiple genes
repRemove               Handle the case where one id corresponds to
                        multiple genes
SNP_QC                  Do quality control of SNP data downloaded from
                        TCGAbiolinks
ventricle               a matrix of gene expression data in GEO
