bb4aab97e5d8bb1d86a7b9b69964a872aa3155982706c70b5cc10796264cae90 1487 DESCRIPTION
9034a13bf755061edf8ba46893fb8f93f631f694dfa521962c20574e490c09a0 892 INDEX
ba745a365aff21f5d63b1b309a7dc7c545e4b727067b5b7c1e22789ed9ca280a 893 Meta/Rd.rds
04abba1fbf14e9ebfa5018fd8a740842010982b85aad6aef0f672275b088d982 122 Meta/features.rds
1e3c7c88379a92887365763a74f4185e22fad9f5a6be9456fd6a95177a74a9c2 930 Meta/hsearch.rds
fa89c3584a7e5cf73d40bbd028c3c8ad3bab4e998d7d855363b9891b0361a0ea 698 Meta/links.rds
1ada2c1cb7a277248e975c10dff0bac583140e3044a532e03a595b348f6f8bc1 522 Meta/nsInfo.rds
fe6a0e969dba32302bbf96835562ec68095198e8f0958582bacf50ae23ff61be 1497 Meta/package.rds
3cafa272652f18726496c059148e10b69532a1da47ca32e25dd58d79ba4aa2a8 226 Meta/vignette.rds
3bc84ca1e093cde92b43dcba9cfb1039d5a653fd3d405809fedf5ea72a5907c7 787 NAMESPACE
78c456d6f4b7136f648507bd98d2dec23681fe033c130f7249a61e330881541c 65 NEWS
570ca456b280cdeb201ef5ebdf22dc8f80092e2c0c68e33c7f73340e420f3759 1058 R/HelloRanges
2e29f37c6c9abd6ac5393e1068de97acdc895ba540a1efd547d55d893b7b3740 256175 R/HelloRanges.rdb
7263b31d40ed867b1518f9b2bee6f7bb8716274ac392c4052a96159a788eb6cc 2183 R/HelloRanges.rdx
3df612f13a08442876562259736d8579bd52178753b00eba88c755dfffb89813 1379 doc/index.html
0c79cfd77cd706607cf7824b741139f2ddc5e79904459673c3b684c185ddf127 14014 doc/tutorial.R
bd55a0b666d3769ce31dd7065d9b1d69b0acd99ef54d3c4882fb787decdbaa75 30203 doc/tutorial.Rnw
121c34d789129ae0faefb168235319ae232486466dd9615fdc8db80d0f97b788 581493 doc/tutorial.pdf
91a03138bfe8de3d1513e1a2b09df8b76151a79cf5c3e5529d5ac9971b4eefcf 2303 help/AnIndex
3f7d2a5c3d14c7b445e7fb15cfde7f15ae12bb62597b21962010c0509f6d812c 128944 help/HelloRanges.rdb
50a32375147b6104d5a9c305ea1d847fe2d87b33972ea462cae7fb8ee04849a5 658 help/HelloRanges.rdx
e8224bbdfa6a3bf152913c87d3b3f4c36a5969c0ad5fb603c07b8f7785e36c52 559 help/aliases.rds
2fd494f42c0a6f6c63f8d85b522871e0076f64c051de9fab52968b49bee01edb 374 help/paths.rds
1df94d527140fed0fe293a0a687c094747bf34336c52f0e964d06d11fa589031 8073 html/00Index.html
3d290675266eebeba6efff07db879d699843c80bf428f9e71000e2fc6078f5db 2133 html/R.css
d93fa5310e773f20e853bf362666d8fce7d3bb3c324a59f8e99b6eaff5a3a559 34 unitTests/data/closest/a.bed
8ed02bd777bfe5757e2b264a57fb59f50730795aad8582e61f2c8e694a48f5e1 11 unitTests/data/closest/b.bed
d99cee15160a7498a0371255ec81fbc1aa9d0569ddec5c38867e68471f64fdf3 144 unitTests/data/closest/close-a.bed
1c5113227930f4212255ce6838444a798153c099e058ab87ef9ef338ff482fc6 87 unitTests/data/closest/close-b.bed
79d461b32d458caa89f9a33f61d83f10de61bf17750c5c10fabc47e825a2ab3e 13 unitTests/data/closest/d.bed
ce7b9065d88abe9589db062b77d00b29a3c329efcb0017e553f620759ab4eba1 24 unitTests/data/closest/d_id.bed
05428e283d3ba7c71a9b02aa44e03082d245f06750935f6038613847d1a710a8 24 unitTests/data/closest/d_iu.bed
78e7e8c2ec3acb034a5602e7abc7c602f0849ded7dabda59d518089b19c95765 61 unitTests/data/closest/mdb1.bed
db81ee9b69c4ffc15700efbc2f6f1bc824ebae3e165aa865bfd38f0041ff11ac 65 unitTests/data/closest/mdb2.bed
d8fd8b6152be297993846100d05a141ba7b35e2e434070d0e3dd30469ed336af 20 unitTests/data/closest/mdb3.bed
e8618fa133a207b6dd3bc7e59c324ba339193d0463491a4960aeecee0b0fa92e 19 unitTests/data/closest/mq1.bed
31a23e2b527e4bd6ed898af3ceeaaec0070c67343ef52d843da6bab7c9d95814 20 unitTests/data/closest/strand-test-a.bed
b61e466988a1cceb8eb75e33e5253f53bffe3f799df28a299711f647051462d9 18 unitTests/data/closest/strand-test-b.bed
3f16705f02086f6845b04791d210d5e3297bf7db768507c34b9ab6aabd015af2 116 unitTests/data/coverage/a.bed
da8a30f997ff84e1ee26b4ff338ec269714a365453ff5013ab6ecac0da60ac8c 396 unitTests/data/coverage/b.bed
758715924ccd93533322508d245eaa67ffa65e47b505a308e5fa65c971a5ebf6 18 unitTests/data/coverage/test.genome
7d76fe81ba44464e93162e942c59d0495e58b14a59a9fdf6ad868bec00f21ac0 40 unitTests/data/flank/a.bed
b52521d37f5929b00afbf5de9e8dda3acee1f83770eecdfed4c180c4a16b116d 10 unitTests/data/flank/tiny.genome
279b6495c41de2bf38633c65389131ba1f75af2ec632fdb1819a5d245ef1b297 450 unitTests/data/genomecov/chip.sam
d69f03227a4a78c06b92d521fe156d74dbd6fe7592978d412caeb8f06ec15f06 505 unitTests/data/genomecov/pair-chip.sam
18ccb886722789d2d7be296ad063d6b6b7f43a6d4d066daad3d7878eb374ddf3 142 unitTests/data/genomecov/sam-w-del.sam
9e3ac0938251fc9e5718ac751ebb6e78a82744783db7e0bd696c69b58e0ed12a 18 unitTests/data/genomecov/test.genome
347d2e52d63e443481270486805323042c0e40216af28e47cf7ca1e7fe88ff09 171 unitTests/data/genomecov/three_blocks.sam
7dcac9280b8c0974a173c2c5151b6f71663fb7b23f73210201e3a3b48767722e 220 unitTests/data/genomecov/y.bam
448cc977fac50b9843151ab32bd5effa33cb72979d850a0c5f7c83202d5988c6 30 unitTests/data/genomecov/y.bed
0c230c224e97243816c8c118c803543f306e6c46bbd339eeda42819b201dfa3e 117 unitTests/data/getfasta/blocks.bed
31acb80648d302908ca4fe0a4b6d39be18f1698bf69312ec05e69c7d363563c3 61 unitTests/data/getfasta/t.fa
80504d82ef3525522521c60a56c849bb21bf875199295d9793576997c6b3e52a 923 unitTests/data/groupby/a_vcfSVtest.vcf
8b696aa15810ff03e35b5f9eac135fd0efc33232483a77bf0d2caab5ae3770b8 250 unitTests/data/groupby/values3.header.bed
b278dbbded4fb91b4b8d4ee7f3c56880864c3fbaf0ace20e8bca566e9c4b3757 38 unitTests/data/intersect/a.bed
69a640a611a3765084a9e813b35c4f94d79d12c69df13fb29272c050898f4496 77 unitTests/data/intersect/b.bed
ae56768f5294a738396887619958dfaf4209172534b7fa02f3e7364a0a60e448 18 unitTests/data/intersect/c.bed
fb71e0bf85fc84c185de2820df27657638a35dbbd162f25570e0aaefc44a5f0f 9 unitTests/data/intersect/d.bed
2cbc8512962eacdd2677b8d47b84a6d472ab66214586f2c7a0339cee39125e38 162 unitTests/data/intersect/one_block.sam
205680019ddfd58ac8354a1d191b0cda95bf141b43b167f8e5085e0ace6bb0ca 176 unitTests/data/intersect/three_blocks.sam
62ebb40b321ff858772d0fa525a9eb912e9555bce2908c6370811f2729e9dd5e 60 unitTests/data/intersect/three_blocks_match.bed
7bc6d4ec7fc12634f1bfe0baee5e76b00fefffa638370685de9b63e241e0e16e 63 unitTests/data/intersect/three_blocks_match_1bp.bed
eca94bae90be524419b66927b46c2c985141ef37d1a5da654a8d674b186b9c55 63 unitTests/data/intersect/three_blocks_nomatch.bed
015b06267fe9dc128ff6543a31f362c50ac72298c4103a535ff1b560a2e8d953 168 unitTests/data/intersect/two_blocks.sam
927e1c4f4135193efeb078e3c40d6c6cd6af211dd89972d43dd24298fefcb6d3 36 unitTests/data/intersect/x.bed
812cf262883eef482edd923ed7e5cde8a0ebcec9cf9eb11fc8cff8fac576948e 34 unitTests/data/intersect/y.bed
08e25dc0bdbd53f69b22539b74b50575a9a0885965db0caa377f7978e0cb2b27 1796 unitTests/data/jaccard/a.bam
d208bd8af06a172d15a54fd5ef9f74fb914488a416884e83d7c77826c54a70a3 61 unitTests/data/jaccard/a.bed
9399fc55154e379b93e0acc857a210504b6c90e9c8d2fff8971953d719df58de 234 unitTests/data/jaccard/aMixedStrands.bed
9dbb99905ecc3061888f487a7be0be7e6e3276edeea07b1a423c44f33a65f93e 104 unitTests/data/jaccard/bMixedStrands.bed
4fd6c00e56d19eaf407b7a3942d91115ff86692203e3bd910c12b23980d81e29 10 unitTests/data/jaccard/e.bed
783f970e6b3c2ea6b52e4b77aff388b01078b36482ca06562811dbbd7170d94d 1804 unitTests/data/jaccard/three_blocks_match.bam
62ebb40b321ff858772d0fa525a9eb912e9555bce2908c6370811f2729e9dd5e 60 unitTests/data/jaccard/three_blocks_match.bed
9e0dbf7449b64748fcc9464c8fa71bb8708b32313d53c85bd776005b337fb410 65 unitTests/data/makewindows/input.bed
758715924ccd93533322508d245eaa67ffa65e47b505a308e5fa65c971a5ebf6 18 unitTests/data/makewindows/test.genome
cb7f3e7b871781e4238d099c75f261f44e8a5ffad93b823efda9eaa246bd7ff4 80 unitTests/data/map/ivls.bed
dd96bb6097f7117f8dca21fb92debb9951ec5363ef790ec064f85bd5518ca17b 56 unitTests/data/map/ivls2.bed
9ae471be848cd928d76a143ff58179935cf42247658c15c552527f6db7339c66 481 unitTests/data/map/test.gff2
732d635aee46168c4fdf1db8de08eef8aefc3a80b0ef062171644a2fc60ccf84 148 unitTests/data/map/values.bed
9a49437d908549927688db14cd1a42d6be8c0384514947b54eff99b7d25f6f8f 148 unitTests/data/map/values5.bed
33f7e1fd5bb9b56987b805603e58848e6692b84ce4987a97a12b5cb02e721371 45 unitTests/data/merge/a.bed
77d37b0d314eb4427e491af84787469b95032b989546522369d7397f13657149 146 unitTests/data/merge/a.full.bed
f6989b508487f591df0c04e546c9ad6dfc9795369561fda88d793195c4ab9ccc 57 unitTests/data/merge/a.names.bed
40b394fcc235af9e06d30137a58110ef83cb70834a8996ecf1fdab458e42e78d 25813 unitTests/data/merge/fullFields.bam
49e5cf60fd55741c031f68cb0d3fd625812541182164c815298048bcb8057b0a 17457 unitTests/data/merge/testA.vcf
990913a62c0aebf047ac1ab55a7b838b5ff3a758ffb0e0838d930bb677a504ff 43 unitTests/data/multiinter/a.bed
726109b6d0a5e4c33bec56f14cbe2f4b5c7c1b48c83d0ee15840270d0db3c090 22 unitTests/data/multiinter/b.bed
aa2acfd48faa23b03ead451ccf8c39ced60b77917377fa4cfffebbdbbaed2437 32 unitTests/data/multiinter/c.bed
95e73c98f96bffd89d3ed49672aa040851fc6c4f3a5bfb3f1b578cc5cfd2f529 10 unitTests/data/multiinter/test.genome
21b807b252cee2096d02fb4546c3eea068441c2beecec1aa8a00911b5df22902 21 unitTests/data/nuc/a.bed
86d33cb835aa58ab22725789c782584d82f31abc59f6355318a8087458c8d65a 84 unitTests/data/nuc/test.fasta
7d76fe81ba44464e93162e942c59d0495e58b14a59a9fdf6ad868bec00f21ac0 40 unitTests/data/shift/a.bed
b52521d37f5929b00afbf5de9e8dda3acee1f83770eecdfed4c180c4a16b116d 10 unitTests/data/shift/tiny.genome
7d76fe81ba44464e93162e942c59d0495e58b14a59a9fdf6ad868bec00f21ac0 40 unitTests/data/slop/a.bed
b52521d37f5929b00afbf5de9e8dda3acee1f83770eecdfed4c180c4a16b116d 10 unitTests/data/slop/tiny.genome
4e3cc69235c01d6749800ecfd9246737e7d8ce0c9c6a8797f42a5fc7bd9e2283 36 unitTests/data/subtract/a.bed
335f6a97f25bdb3ea654ab905fea93db967fb1455fb15b426e310f84b7bdc103 36 unitTests/data/subtract/b.bed
15b3f2eb412a054ce887cfd8f2de7727944152649299167ffa4387e5c76f0b1c 10 unitTests/data/subtract/c.bed
129930c7d65080ae0853f37c794ce1aceff557bbb3d721e57520f15b264c497c 27 unitTests/data/subtract/d.bed
c3c0dd7a623eb343ae2224c214f1e26fed805164dbc32f8799bfc23dd82be314 36 unitTests/data/unionbedg/a.bedGraph
93bf486dae891d969ad7f5ee350516290a00f4307ed36f02664ae130aa948b6a 35 unitTests/data/unionbedg/b.bedGraph
ca1608bd32ad61f039ac166e5db743e1a9af1be4548eb6c18c308379ed6cce5c 36 unitTests/data/unionbedg/c.bedGraph
95e73c98f96bffd89d3ed49672aa040851fc6c4f3a5bfb3f1b578cc5cfd2f529 10 unitTests/data/unionbedg/test.genome
4c01159e7adb99ef632926c7ad99cfbc1ea8e30b104be8ba72f5819c0effda6b 3775 unitTests/test_closest.R
18154c6d98bda087d26faca957fc8af667735b9d037b4255302c2b0a4692a3e4 2925 unitTests/test_coverage.R
fa3cee1791aba0fbe37ff71b7efc4a4465fa7b685cda367d4d4dc53324bd37ba 1224 unitTests/test_flank.R
fc497fb9f1990e4d6b771a4b869b739e4f92ae2c8f8cd9e57fc9265ee3baaf79 2674 unitTests/test_genomecov.R
2707534d550fdf3213be154e6619e8b01833a62ea55aa028f22092f5d56a4ee7 838 unitTests/test_getfasta.R
e4b5924a18ff063cd0ca2f0e9668f0acba97ef372e64ad191cffefd7785733fc 845 unitTests/test_groupby.R
73fe31e6e4ab8f15dbf994ab8ea9651b2ecc3a92d0c2546dc1509f157a45edb2 6335 unitTests/test_intersect.R
b69d58d8af459645cfa431f3f28c87f201ba1b6d7ba22bc8dda323660bfc11f6 1626 unitTests/test_jaccard.R
bce648544d9a561ee46cf809b732ef5e53b221c117f86e885c2c6d7d63db28cc 989 unitTests/test_makewindows.R
474d02865f5c347a379d72cb3f8a3afd460f1aa32f0bcdcf1d177d6a77929cd6 1636 unitTests/test_map.R
d9d5603ae719ac21db9e264515ace5088f5cd35d4853d0bebc51a20150dad425 3615 unitTests/test_merge.R
f56cee62df323640fdfafa923032ae2832c2ca32c3a506906934bf808c513204 1384 unitTests/test_multiinter.R
662584776abbfb5f0c433b010e924c09c8704c231d76884ef84ad267ed05a1db 880 unitTests/test_nuc.R
e6c33cd63a9147d655bec4ab66afbe3b663df3fe356eaaf1daaebca931f48716 1007 unitTests/test_shift.R
968b521b7bcc880f0a84300ba83142eeabe7c20455ffebe5c3904cb4183e4532 1132 unitTests/test_slop.R
43289def4465d45b28088a54d6e246bd5bee7884ea0d736d754e36e14bd34f18 1599 unitTests/test_subtract.R
187af81f812ed1d4b0a3f9c7730ebf7d444fa123b69425ac1903e2fe72587550 1588 unitTests/test_unionbedg.R
