calculateFDRs           Determine false discovery rate
MethylSeekR-package     Segmentation of Bis-seq methylation data
plotAlphaDistributionOneChr
                        Calculate and plot alpha distribution.
plotFinalSegmentation   Plotting final segmentation
plotPMDSegmentation     Plotting the PMD Segmentation
readMethylome           Load Bis-seq data
readSNPTable            Load SNP table
removeSNPs              Remove CpGs overlapping SNPs
savePMDSegments         Save PMD segments
saveUMRLMRSegments      Save UMR and LMR segments
segmentPMDs             PMD segmenter
segmentUMRsLMRs         Identify UMRs and LMRs
