BeadChip-class	BeadChip-class
BeadChip96ToMSA4MAP	MSAroboticPlate-class
BeadPlate-class	BeadPlate-class
cid,gContainer-method	gContainer-class
create.experiment.setup	gExperimentSetup-class
create.optimized.setup	create.optimized.setup
dim,gArray-method	gArray-class
exclude<-	gContainer-class
exclude<-,gContainer-method	gContainer-class
gArray-class	gArray-class
gAssembly-class	gAssembly-class
gc	example.setup
gContainer-class	gContainer-class
GenotypingChip	BeadChip-class
get.experiment.setup	get.experiment.setup
get.gAssembly,gContainer-method	gContainer-class
get.gAssembly,gExperimentSetup-method	gExperimentSetup-class
getLayout	gArray-class
getLayout, gPlate-method	gPlate-class
getLayout,BeadChip-method	BeadChip-class
getLayout,gArray-method	gArray-class
getLayout,gAssembly-method	gAssembly-class
getLayout,gContainer-method	gContainer-class
getLayout,gSlide-method	gSlide-class
getLayout,MSAroboticPlate-method	MSAroboticPlate-class
gExperimentSetup-class	gExperimentSetup-class
gPlate-class	gPlate-class
gs	example.setup
gSample-class	gSample-class
gSetup	example.setup
gSetup2	example.setup
gSlide-class	gSlide-class
IlluminaBeadChip	BeadChip-class
IlluminaBeadChip24Plate	BeadPlate-class
IlluminaBeadChip48Plate	BeadPlate-class
IlluminaBeadChip96Plate	BeadPlate-class
initialize,gAssembly-method	gAssembly-class
initialize,gContainer-method	gContainer-class
initialize,gExperimentSetup-method	gExperimentSetup-class
initialize,gPlate-method	gPlate-class
initialize,gSample-method	gSample-class
initialize,gSlide-method	gSlide-class
initialize,MSAroboticPlate-method	MSAroboticPlate-class
map.to.MSA	MSAroboticPlate-class
map.to.MSA,data.frame,MSAroboticPlate-method	MSAroboticPlate-class
map.to.MSA,gExperimentSetup,MSAroboticPlate-method	MSAroboticPlate-class
metadata	gArray-class
metadata,gArray-method	gArray-class
metadata,gAssembly-method	gAssembly-class
metadata,gContainer-method	gContainer-class
metadata,gExperimentSetup-method	gExperimentSetup-class
metadata<-	gArray-class
metadata<-,gArray-method	gArray-class
metadata<-,gAssembly-method	gAssembly-class
metadata<-,gContainer-method	gContainer-class
metadata<-,gExperimentSetup-method	gExperimentSetup-class
MSA4.plate	MSAroboticPlate-class
MSAroboticPlate-class	MSAroboticPlate-class
multi.barplot	multi.barplot
multi.chisq.test	multi.chisq.test
ncol,gArray-method	gArray-class
nrow,gArray-method	gArray-class
optimal.block	optimal.block
optimal.shuffle	optimal.shuffle
pheno	example.setup
plot,gExperimentSetup,missing-method	plot-methods
plot-methods	plot-methods
predefined	predefined
QC	QC
samples,gExperimentSetup-method	gExperimentSetup-class
setup.container	gContainer-class
setup.sample	gSample-class
show,gAssembly-method	gAssembly-class
show,gContainer-method	gContainer-class
show,gExperimentSetup-method	gExperimentSetup-class
show,gPlate-method	gPlate-class
show,gSample-method	gSample-class
show,gSlide-method	gSlide-class
show,MSAroboticPlate-method	MSAroboticPlate-class
summary	gSample-class
summary,gExperimentSetup-method	gExperimentSetup-class
summary,gSample-method	gSample-class
