aggregate               Aggregate data per positions
compare                 Comparison of Samples
CoverageSequenceData-class
                        CoverageSequenceData
EndSequenceData-class   End5SequenceData/End3SequenceData/EndSequenceData
Modifier-class          The Modifier class
Modifier-functions      Modifier/ModifierSet functions
ModifierSet-class       The ModifierSet class
modify                  Searching for modifications in 'SequenceData'
ModInosine              ModInosine
ModInosine-functions    Functions for ModInosine
ModInosine-internals    ModInosine internal functions
NormEndSequenceData-class
                        NormEnd5SequenceData/NormEnd3SequenceData
PileupSequenceData-class
                        PileupSequenceData
plotData                Visualizing data data from a 'SequenceData',
                        'SequenceDataSet', 'SequenceDataList',
                        'Modifier' or 'ModifierSet' object.
plotROC                 ROCR functions for 'Modifier' and 'ModifierSet'
                        objects
ProtectedEndSequenceData-class
                        ProtectedEndSequenceData
RNAmodR                 RNAmodR
RNAmodR-datasets        Example data in the RNAmodR package
RNAmodR-development     RNAmodR developments functions
SequenceData-class      The SequenceData class
SequenceData-functions
                        SequenceData/SequenceDataSet/SequenceDataList/SequenceDataFrame
                        functions
SequenceDataFrame-class
                        The SequenceDataFrame class
SequenceDataList-class
                        The SequenceDataList class
SequenceDataSet-class   The SequenceDataSet class
SequenceModDNAStringSetTrack-class
                        ModDNASequenceTrack
SequenceModRNAStringSetTrack-class
                        ModRNASequenceTrack
settings                Settings for 'Modifier' objects
stats                   Retrieving information about used reads in
                        RNAmodR
subsetByCoord           Subsetting data from a 'SequenceData',
                        'SequenceDataSet', 'SequenceDataList',
                        'Modifier' or 'ModifierSet' object.
