calculate.rpa           RPA with HITChip
collect.hyperparameters
                        collect.hyperparameters
d.update.fast           Fast d update
estimate.affinities     estimate.affinities
estimate.hyperparameters
                        estimate.hyperparameters
frpa                    frpa
get.batches             get.batches Split data into batches
get.probe.matrix        get.probe.matrix
get.probe.parameters    get.probe.parameters
get.probeset            Get probeset
hyperparameter.update   hyperparameter.update
n.phylotypes.per.oligo
                        n.phylotypes.per.oligo
online.quantile         online.quantile Quantile normalization tools
                        for online preprocessing. Estimate quantiles
                        for quantile normalization based on subset of
                        the data (random, or specified by the user).
probe.parameters.tolist
                        probe.parameters.tolist
probe.performance       Probe performance
probeplot               probeplot Plot RPA results and probe-level data
                        for a specified probeset.
probetable              probetable
rpa                     rpa
RPA-package             RPA: probabilistic analysis of probe
                        reliability and gene expression
rpa.complete            Complete RPA preprocessing
rpa.fit                 RPA fit
RPA.iteration           RPA iteration
rpa.online              rpa.online
rpa.plot                rpa.plot
RPA.preprocess          RPA preprocessing
rpa.summarize           rpa.summarize
rpaplot                 rpaplot Plot RPA results and probe-level data
                        for a specified probeset.
sample.probeset         sample.probeset
summarize_probedata     Summarize probedata
summarize.batch         summarize.batch
summarize.batches       summarize.batches
summarize.rpa           RPA summarization
summarize.sum           Sum-based probe summarization
updating.hyperparameters
                        updating hyperparameters
