R: RPA: Robust Probabilistic Averaging for probe-level analysis

# RPA: Robust Probabilistic Averaging for probe-level analysis

## Documentation for package ‘RPA’ version 1.68.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

RPA-package | RPA: probabilistic analysis of probe reliability and gene expression
calculate.rpa | RPA with HITChip
collect.hyperparameters | collect.hyperparameters
d.update.fast | Fast d update
estimate.affinities | estimate.affinities
estimate.hyperparameters | estimate.hyperparameters
frpa | frpa
get.batches | get.batches Split data into batches
get.probe.matrix | get.probe.matrix
get.probe.parameters | get.probe.parameters
get.probeset | Get probeset
hyperparameter.update | hyperparameter.update
n.phylotypes.per.oligo | n.phylotypes.per.oligo
online.quantile | online.quantile Quantile normalization tools for online preprocessing. Estimate quantiles for quantile normalization based on subset of the data (random, or specified by the user).
probe.parameters.tolist | probe.parameters.tolist
probe.performance | Probe performance
probeplot | probeplot Plot RPA results and probe-level data for a specified probeset.
probetable | probetable
RPA | RPA: probabilistic analysis of probe reliability and gene expression
rpa | rpa
rpa.complete | Complete RPA preprocessing
rpa.fit | RPA fit
RPA.iteration | RPA iteration
rpa.online | rpa.online
rpa.plot | rpa.plot
RPA.preprocess | RPA preprocessing
rpa.summarize | rpa.summarize
rpaplot | rpaplot Plot RPA results and probe-level data for a specified probeset.
sample.probeset | sample.probeset
summarize.batch | summarize.batch
summarize.batches | summarize.batches
summarize.rpa | RPA summarization
summarize.sum | Sum-based probe summarization
summarize_probedata | Summarize probedata
updating.hyperparameters | updating hyperparameters