data                    Synthetic single-cell, mixture and marker data
resolveGroup            'resolveGroup()' converts a user supplied
                        *group specification* into the column indices
                        of the corresponding leaves in a **counts**
                        taxa matrix. A group specification can be:
SETA-package            Single Cell Ecological Taxonomic Analysis
setaALR                 Additive Log-Ratio (ALR) Transform
setaBalance             User-defined balance transform (geometric-mean
                        log-ratio)
setaCLR                 Centered Log-Ratio (CLR) Transform Applies a
                        CLR transform to a matrix of counts. Samples
                        should be in rows and taxa (cell types) in
                        columns. For each sample, the transform
                        computes \mathrm{CLR}(x)_i = \log \big( (x_i +
                        c) / g(x + c) \big), where g(x + c) is the
                        geometric mean of the row.
setaCounts              Extract Taxonomic Counts from Various Single
                        Cell Objects
setaDistances           Compute Distance Matrix between Samples
setaILR                 Isometric Log-Ratio (ILR) Transform Applies the
                        ILR transform to an integer counts matrix. For
                        each sample (row), the data are log-transformed
                        (with an optional Box Cox like transformation)
                        then projected onto an orthonormal Helmert
                        basis, reducing dimensionality by one.
setaLatent              Compute a Latent Space from Transformed Counts
setaLogCPM              log2(CPM) Transform Computes the log2
                        counts-per-million (CPM) for each sample.
                        Samples are in rows and taxa in columns.
setaMetadata            Extract Sample-Level Metadata from Various
                        Objects
setaPercent             Percentage Transform Converts each row (sample)
                        of a counts matrix to percentages of its row
                        sum.
setaTaxonomyDF          Build a taxonomy data frame at multiple
                        resolutions
setaTransform           Wrapper for Compositional Transforms with
                        Optional Within-Lineage Resolutions A
                        convenience function that dispatches to one of
                        the transforms: CLR, ALR, ILR, percent, or
                        logCPM. Note that the input 'counts' matrix
                        should have rows as samples and columns as
                        taxa. Optionally, you can supply a taxonomy
                        data frame to perform a within-lineage
                        transform at a specified resolution.
taxonomy_to_tbl_graph   Convert Multi-Column Taxonomy to a Single-Root
                        tbl_graph (with node metadata)
