Package: Site2Target
Type: Package
Title: An R package to associate peaks and target genes
Version: 1.4.0
Authors@R: person("Peyman Zarrineh", email="peyman.zarrineh@manchester.ac.uk", role=c("cre", "aut"), comment = c(ORCID = "0000-0003-4820-4101"))
Description: Statistics implemented for both peak-wise and gene-wise
        associations. In peak-wise associations, the p-value of the
        target genes of a given set of peaks are calculated. Negative
        binomial or Poisson distributions can be used for modeling the
        unweighted peaks targets and log-nromal can be used to model
        the weighted peaks. In gene-wise associations a table
        consisting of a set of genes, mapped to specific peaks, is
        generated using the given rules.
BugReports: https://github.com/fls-bioinformatics-core/Site2Target/issues
Depends: R (>= 4.4)
License: GPL-2
Encoding: UTF-8
Imports: S4Vectors, stats, utils, BiocGenerics, GenomeInfoDb, MASS,
        IRanges, GenomicRanges
biocViews: Annotation, ChIPSeq, Software, Epigenetics, GeneExpression,
        GeneTarget
RoxygenNote: 7.3.2
Suggests: BiocStyle, knitr, rmarkdown, testthat (>= 3.0.0)
VignetteBuilder: knitr
Config/testthat/edition: 3
Config/pak/sysreqs: libssl-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2026-04-28 13:04:44 UTC
RemoteUrl: https://github.com/bioc/Site2Target
RemoteRef: RELEASE_3_23
RemoteSha: ce9001280a619e0fc8dacf0ca1bd037c984e5d08
NeedsCompilation: no
Packaged: 2026-05-01 09:40:28 UTC; root
Author: Peyman Zarrineh [cre, aut] (ORCID:
    <https://orcid.org/0000-0003-4820-4101>)
Maintainer: Peyman Zarrineh <peyman.zarrineh@manchester.ac.uk>
Built: R 4.6.0; ; 2026-05-01 09:50:49 UTC; unix
