R: Splicing Diversity Analysis for Transcriptome Data

# Splicing Diversity Analysis for Transcriptome Data

## Documentation for package ‘SplicingFactory’ version 1.20.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

calculate_difference | Calculate splicing diversity changes between two conditions.
calculate_diversity | Main function for calculating splicing diversity
calculate_entropy | Calculate entropy for a vector of transcript-level expression values of one gene.
calculate_fc | Calculate splicing diversity changes between two conditions.
calculate_gini | Calculate Gini coefficient for a vector of transcript-level expression values of one gene.
calculate_inverse_simpson | #' Calculate inverse Simpson index for a vector of transcript-level expression values of one gene.
calculate_method | Calculate diversity values for a matrix of transcripts.
calculate_simpson | #' Calculate Simpson index for a vector of transcript-level expression values of one gene.
label_shuffling | Calculate p-values using label shuffling.
tcga_brca_luma_dataset | TCGA Luminal A breast cancer dataset
wilcoxon | Calculate p-values using Wilcoxon rank sum test.