Package: SplicingFactory
Type: Package
Title: Splicing Diversity Analysis for Transcriptome Data
biocViews: Transcriptomics, RNASeq, DifferentialSplicing,
        AlternativeSplicing, TranscriptomeVariant
Version: 1.20.0
Authors@R: c(
    person("Peter A.", "Szikora", role = c("aut"), email = "peter.andras.szikora@gmail.com"),
    person("Tamas", "Por", role = c("aut"), email = "tomasz.por@gmail.com"),
    person("Endre", "Sebestyen", role = c("aut", "cre"), email = "endre.sebestyen@gmail.com", comment = c(ORCID = "0000-0001-5470-2161")))
Description: The SplicingFactory R package uses transcript-level
        expression values to analyze splicing diversity based on
        various statistical measures, like Shannon entropy or the Gini
        index. These measures can quantify transcript isoform diversity
        within samples or between conditions. Additionally, the package
        analyzes the isoform diversity data, looking for significant
        changes between conditions.
RoxygenNote: 7.1.1
Imports: SummarizedExperiment, methods, stats
Suggests: testthat, knitr, rmarkdown, ggplot2, tidyr
URL: https://github.com/esebesty/SplicingFactory
BugReports: https://github.com/esebesty/SplicingFactory/issues
Depends: R (>= 4.1)
License: GPL-3 + file LICENSE
Encoding: UTF-8
LazyData: true
VignetteBuilder: knitr
Config/pak/sysreqs: zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2026-04-28 12:54:35 UTC
RemoteUrl: https://github.com/bioc/SplicingFactory
RemoteRef: RELEASE_3_23
RemoteSha: 67e649dac57736e1d29522bf0271e344a26e501c
NeedsCompilation: no
Packaged: 2026-04-30 06:37:27 UTC; root
Author: Peter A. Szikora [aut],
  Tamas Por [aut],
  Endre Sebestyen [aut, cre] (ORCID:
    <https://orcid.org/0000-0001-5470-2161>)
Maintainer: Endre Sebestyen <endre.sebestyen@gmail.com>
Built: R 4.6.0; ; 2026-04-30 07:43:19 UTC; unix
