calculateEvents         Calculate UPD events in trio VCFs.
collapseEvents          Collapse events per sample and chromosome
hmm                     HMM data for predicting UPD events in trio
                        genomic data
identifyRecurrentRegions
                        Identify recurrent genomic regions across
                        samples
markRecurrentRegions    Annotate regions as recurrent or non-recurrent
vcfCheck                Check quality parameters (optional), change IDs
                        and encode genotypes numerically
