Author: ampliCan

# Summary Read Report

# Other Reports

1. Report by id
2. Report by barcode
3. Report by group
4. Report by guide
5. Report by amplicon

# Explanation of variables

Experiment Count - how many IDs belongs to this barcode
Read Count - how many reads belongs to this barcode
Bad Base Quality - how many reads had base quality worse than specified (default is 0)
Bad Average Quality - how many reads had average base quality worse than specified (default is 0)
Bad Alphabet - how many reads had alphabet with bases other than A, C, G, T
Filtered Read Count - how many reads were left after filtering
Unique Reads - how many reads (forward and reverse together) for this barcode is unique
Assigned Reads/Unassigned Reads - how many reads have been assigned/not assigned to any of the experiments

# Total reads

## Read Quality

## Read assignment

## Edits

# Reads by barcode

# Summary Table

Barcodes | Experiment Count | Read Count | Bad base quality | Bad average quality | Bad alphabet | Good Reads | Unique Reads | Unassigned Reads | Assigned Reads
--- | --- | --- | --- | --- | --- | --- | --- | --- | ---
barcode_1 | 2 | 20 | 0 | 3 | 0 | 17 | 11 | 4 | 7
barcode_2 | 3 | 21 | 0 | 0 | 0 | 21 | 9 | 0 | 9

Table 1. Reads distributed for each barcode