callMetrics             Calculate the metrics of insert size
callMode                Calculate the mode fragment size of each sample
callPeakDistance        Calculate the inter-peak distance of insert
                        size
callSize                Calculate the insert size metrics (i.e. prop,
                        cdf, 1-cdf) or each group
callValleyDistance      Calculate the inter-valley distance of insert
                        size
examplePath             Get path to cfDNAPro example folder.
plotAllToOne            Plot the raw fragment size metrics (e.g.
                        proportion, cdf and 1-cdf) of all groups with
                        different colors in a single plot
plotMetrics             Plot the fragment size metrics (i.e.
                        proportion, cdf and 1-cdf)
plotMode                Plot mode fragment size
plotModeSummary         Summarize and plot mode fragment size in a
                        stacked bar chart
plotPeakDistance        Plot the inter-peak distance of fragment size
                        distance distribution
plotSingleGroup         Plot the raw fragment size metrics of single
                        group in a single plot, colored by samples.
plotValleyDistance      Plot the inter-valley distance of fragment size
                        distance distribution
read_bam_insert_metrics
                        Calculate insert sizes from a curated GRanges
                        object
readBam                 Read bam file into a curated GRanges object
