# Generated by roxygen2: do not edit by hand

export(callMetrics)
export(callMode)
export(callPeakDistance)
export(callSize)
export(callValleyDistance)
export(examplePath)
export(plotAllToOne)
export(plotMetrics)
export(plotMode)
export(plotModeSummary)
export(plotPeakDistance)
export(plotSingleGroup)
export(plotValleyDistance)
export(readBam)
export(read_bam_insert_metrics)
import(dplyr)
import(ggplot2)
import(magrittr)
import(stringr)
importFrom(BiocGenerics,end)
importFrom(BiocGenerics,start)
importFrom(BiocGenerics,strand)
importFrom(BiocGenerics,which)
importFrom(BiocGenerics,width)
importFrom(GenomeInfoDb,"genome<-")
importFrom(GenomeInfoDb,"seqlengths<-")
importFrom(GenomeInfoDb,genome)
importFrom(GenomeInfoDb,isCircular)
importFrom(GenomeInfoDb,keepSeqlevels)
importFrom(GenomeInfoDb,seqinfo)
importFrom(GenomeInfoDb,seqlengths)
importFrom(GenomicRanges,GRanges)
importFrom(GenomicRanges,seqnames)
importFrom(IRanges,IRanges)
importFrom(Rsamtools,ScanBamParam)
importFrom(Rsamtools,scanBam)
importFrom(Rsamtools,scanBamFlag)
importFrom(dplyr,arrange)
importFrom(dplyr,bind_rows)
importFrom(dplyr,filter)
importFrom(dplyr,group_by)
importFrom(dplyr,lag)
importFrom(dplyr,mutate)
importFrom(dplyr,rename)
importFrom(dplyr,select)
importFrom(dplyr,summarise)
importFrom(dplyr,summarize)
importFrom(dplyr,ungroup)
importFrom(magrittr,"%>%")
importFrom(quantmod,findValleys)
importFrom(rlang,.data)
importFrom(stats,median)
importFrom(stats,na.omit)
importFrom(stringr,str_detect)
importFrom(tibble,tibble)
importFrom(utils,read.table)
