# Generated by roxygen2: do not edit by hand

export(ICL)
export(NormMixClus)
export(NormMixClusK)
export(NormMixParam)
export(clusterEntropy)
export(clusterInertia)
export(clusters)
export(compareARI)
export(compareICL)
export(convertLegacyCoseq)
export(coseq)
export(coseqFullResults)
export(coseqGlobalPlots)
export(coseqModelPlots)
export(coseqResults)
export(coseqRun)
export(kmeansProbaPost)
export(likelihood)
export(logclr)
export(matchContTable)
export(model)
export(nbCluster)
export(plot)
export(proba)
export(profiles)
export(tcounts)
export(transformRNAseq)
export(transformationType)
exportClasses(coseqResults)
exportMethods(DDSEextract)
exportMethods(Djumpextract)
exportMethods(ICL)
exportMethods(clusters)
exportMethods(compareARI)
exportMethods(coseq)
exportMethods(coseqFullResults)
exportMethods(likelihood)
exportMethods(model)
exportMethods(nbCluster)
exportMethods(plot)
exportMethods(proba)
exportMethods(profiles)
exportMethods(show)
exportMethods(summary)
exportMethods(tcounts)
exportMethods(transformationType)
import(SummarizedExperiment)
import(ggplot2)
import(methods)
importClassesFrom(S4Vectors,DataFrame)
importClassesFrom(capushe,Capushe)
importFrom(BiocParallel,bplapply)
importFrom(BiocParallel,bpparam)
importFrom(DESeq2,results)
importFrom(DESeq2,varianceStabilizingTransformation)
importFrom(HTSCluster,PoisMixClus)
importFrom(HTSCluster,PoisMixClusWrapper)
importFrom(HTSCluster,highDimensionARI)
importFrom(HTSFilter,HTSBasicFilter)
importFrom(Rmixmod,mixmodCluster)
importFrom(Rmixmod,mixmodGaussianModel)
importFrom(Rmixmod,mixmodStrategy)
importFrom(S4Vectors,DataFrame)
importFrom(capushe,capushe)
importFrom(compositions,alr)
importFrom(compositions,clr)
importFrom(compositions,ilr)
importFrom(corrplot,corrplot)
importFrom(e1071,matchClasses)
importFrom(edgeR,calcNormFactors)
importFrom(edgeR,cpm)
importFrom(grDevices,heat.colors)
importFrom(grDevices,n2mfrow)
importFrom(graphics,axis)
importFrom(graphics,barplot)
importFrom(graphics,boxplot)
importFrom(graphics,matplot)
importFrom(graphics,mtext)
importFrom(graphics,par)
importFrom(graphics,plot)
importFrom(graphics,points)
importFrom(mvtnorm,dmvnorm)
importFrom(scales,alpha)
importFrom(stats,cov2cor)
importFrom(stats,dist)
importFrom(stats,hclust)
importFrom(stats,kmeans)
importFrom(stats,median)
importFrom(stats,na.omit)
importFrom(stats,p.adjust)
importMethodsFrom(DESeq2,counts)
importMethodsFrom(DESeq2,sizeFactors)
importMethodsFrom(S4Vectors,metadata)
