# Generated by roxygen2: do not edit by hand

export(cellAssignments)
export(cellInformation)
export(cellIntensities)
export(countCells)
export(createColorBar)
export(dnaGate)
export(expandRadius)
export(findFirstSphere)
export(getCenterCell)
export(intensities)
export(intensityRanges)
export(interpretSpheres)
export(labelSpheres)
export(medIntensities)
export(multiIntHist)
export(neighborDistances)
export(normalizeBatch)
export(outlierGate)
export(pickBestMarkers)
export(plotSphereIntensity)
export(plotSphereLogFC)
export(poolCells)
export(prepareCellData)
export(spatialFDR)
exportClasses(CyData)
exportMethods("[")
exportMethods("[<-")
exportMethods(cbind)
exportMethods(markernames)
exportMethods(show)
import(SingleCellExperiment)
import(methods)
importClassesFrom(SingleCellExperiment,SingleCellExperiment)
importClassesFrom(flowCore,flowSet)
importFrom(Biobase,AnnotatedDataFrame)
importFrom(Biobase,exprs)
importFrom(Biobase,sampleNames)
importFrom(BiocGenerics,colnames)
importFrom(BiocNeighbors,buildIndex)
importFrom(BiocNeighbors,findDistance)
importFrom(BiocNeighbors,findKNN)
importFrom(BiocNeighbors,findNeighbors)
importFrom(BiocNeighbors,queryKNN)
importFrom(BiocParallel,SerialParam)
importFrom(Rcpp,sourceCpp)
importFrom(S4Vectors,DataFrame)
importFrom(S4Vectors,List)
importFrom(S4Vectors,coolcat)
importFrom(S4Vectors,metadata)
importFrom(S4Vectors,setValidity2)
importFrom(SingleCellExperiment,SingleCellExperiment)
importFrom(SingleCellExperiment,int_colData)
importFrom(SingleCellExperiment,int_elementMetadata)
importFrom(SingleCellExperiment,int_metadata)
importFrom(SummarizedExperiment,"assay<-")
importFrom(SummarizedExperiment,"assayNames<-")
importFrom(SummarizedExperiment,assayNames)
importFrom(SummarizedExperiment,colData)
importFrom(flowCore,flowFrame)
importFrom(flowCore,markernames)
importFrom(flowCore,polygonGate)
importFrom(flowCore,rectangleGate)
importFrom(grDevices,col2rgb)
importFrom(grDevices,rainbow)
importFrom(grDevices,rgb)
importFrom(graphics,hist)
importFrom(graphics,legend)
importFrom(graphics,lines)
importFrom(graphics,par)
importFrom(graphics,plot)
importFrom(graphics,plot.new)
importFrom(graphics,points)
importFrom(graphics,polygon)
importFrom(graphics,rect)
importFrom(graphics,segments)
importFrom(graphics,text)
importFrom(methods,as)
importFrom(methods,is)
importFrom(methods,show)
importFrom(shiny,HTML)
importFrom(shiny,actionButton)
importFrom(shiny,br)
importFrom(shiny,column)
importFrom(shiny,fluidRow)
importFrom(shiny,h4)
importFrom(shiny,headerPanel)
importFrom(shiny,hr)
importFrom(shiny,htmlOutput)
importFrom(shiny,mainPanel)
importFrom(shiny,nearPoints)
importFrom(shiny,observe)
importFrom(shiny,observeEvent)
importFrom(shiny,pageWithSidebar)
importFrom(shiny,plotOutput)
importFrom(shiny,reactive)
importFrom(shiny,reactiveValues)
importFrom(shiny,renderPlot)
importFrom(shiny,renderTable)
importFrom(shiny,renderUI)
importFrom(shiny,runApp)
importFrom(shiny,selectInput)
importFrom(shiny,shinyApp)
importFrom(shiny,sidebarPanel)
importFrom(shiny,sliderInput)
importFrom(shiny,stopApp)
importFrom(shiny,tableOutput)
importFrom(shiny,textInput)
importFrom(shiny,updateSelectInput)
importFrom(shiny,updateTextInput)
importFrom(stats,approx)
importFrom(stats,approxfun)
importFrom(stats,coef)
importFrom(stats,density)
importFrom(stats,lm)
importFrom(stats,lm.fit)
importFrom(stats,mad)
importFrom(stats,median)
importFrom(stats,quantile)
importFrom(stats,splinefun)
importFrom(utils,head)
importFrom(utils,tail)
importFrom(viridis,viridis)
importMethodsFrom(BiocGenerics,"colnames<-")
useDynLib(cydar, .registration=TRUE)
