countCells              Count cells in high-dimensional space
createColorBar          Create a color bar
CyData                  CyData class and methods
dnaGate                 Gate events based on DNA channels
expandRadius            Expand the hypersphere radius
findFirstSphere         Identifies the first non-redundant hyperspheres
intensityRanges         Define intensity ranges
interpretSpheres        Interactive interpretation of hyperspheres
labelSpheres            Label unannotated hyperspheres
medIntensities          Compute median marker intensities
multiIntHist            multiIntHist
neighborDistances       Compute distances to neighbors
normalizeBatch          Normalize intensities across batches
outlierGate             Create an outlier gate
pickBestMarkers         Pick best markers
plotSphereIntensity     Plot cell or hypersphere data
plotSphereLogFC         Plot changes in hypersphere abundance
poolCells               Pool cells for pre-processing
prepareCellData         Prepare mass cytometry data
spatialFDR              Compute the spatial FDR
