# Generated by roxygen2: do not edit by hand

export(compareFootprints)
export(createExampleData)
export(diNOMeTest)
export(footprintCalc)
export(footprintPerc)
export(footprintQuant)
export(fpPercHeatmap)
export(metaPlots)
importFrom(BiocGenerics,cbind)
importFrom(ComplexHeatmap,Heatmap)
importFrom(GenomicRanges,GPos)
importFrom(GenomicRanges,GRanges)
importFrom(GenomicRanges,end)
importFrom(GenomicRanges,mcols)
importFrom(GenomicRanges,seqnames)
importFrom(GenomicRanges,start)
importFrom(GenomicRanges,strand)
importFrom(Matrix,Matrix)
importFrom(SummarizedExperiment,"assay<-")
importFrom(SummarizedExperiment,"assays<-")
importFrom(SummarizedExperiment,SummarizedExperiment)
importFrom(SummarizedExperiment,assays)
importFrom(SummarizedExperiment,colData)
importFrom(SummarizedExperiment,rowData)
importFrom(SummarizedExperiment,rowRanges)
importFrom(circlize,colorRamp2)
importFrom(cowplot,plot_grid)
importFrom(dplyr,left_join)
importFrom(edgeR,DGEList)
importFrom(edgeR,calcNormFactors)
importFrom(edgeR,estimateDisp)
importFrom(edgeR,glmQLFTest)
importFrom(edgeR,glmQLFit)
importFrom(edgeR,topTags)
importFrom(ggplot2,aes)
importFrom(ggplot2,facet_wrap)
importFrom(ggplot2,geom_abline)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,ggtitle)
importFrom(ggplot2,scale_color_manual)
importFrom(ggplot2,scale_shape_manual)
importFrom(ggplot2,theme_classic)
importFrom(ggplot2,vars)
importFrom(ggplot2,xlim)
importFrom(ggplot2,ylim)
importFrom(methods,is)
importFrom(rlang,.data)
importFrom(stats,complete.cases)
importFrom(stats,dist)
importFrom(stats,hclust)
importFrom(stats,loess)
importFrom(stats,model.matrix)
importFrom(stringr,str_extract)
importFrom(tibble,tibble)
importFrom(tidyr,pivot_longer)
importFrom(tidyr,pivot_wider)
importFrom(tidyselect,all_of)
