# Generated by roxygen2: do not edit by hand

export(classify_gene_pairs)
export(classify_genes)
export(duplicates2counts)
export(find_ks_peaks)
export(get_anchors_list)
export(get_intron_counts)
export(get_segmental)
export(get_tandem_proximal)
export(get_transposed)
export(get_transposed_classes)
export(pairs2kaks)
export(plot_duplicate_freqs)
export(plot_ks_distro)
export(plot_ks_peaks)
export(plot_rates_by_species)
export(split_pairs_by_peak)
importFrom(AnnotationDbi,select)
importFrom(Biostrings,width)
importFrom(GenomicFeatures,intronsByTranscript)
importFrom(GenomicRanges,GRangesList)
importFrom(MSA2dist,indices2kaks)
importFrom(ggplot2,aes)
importFrom(ggplot2,after_stat)
importFrom(ggplot2,element_blank)
importFrom(ggplot2,facet_grid)
importFrom(ggplot2,facet_wrap)
importFrom(ggplot2,geom_bar)
importFrom(ggplot2,geom_boxplot)
importFrom(ggplot2,geom_density)
importFrom(ggplot2,geom_histogram)
importFrom(ggplot2,geom_violin)
importFrom(ggplot2,geom_vline)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,ggplot_build)
importFrom(ggplot2,labs)
importFrom(ggplot2,scale_fill_manual)
importFrom(ggplot2,scale_x_continuous)
importFrom(ggplot2,scale_y_continuous)
importFrom(ggplot2,stat_function)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_bw)
importFrom(ggplot2,vars)
importFrom(mclust,densityMclust)
importFrom(rlang,.data)
importFrom(stats,density)
importFrom(stats,dnorm)
importFrom(syntenet,interspecies_synteny)
importFrom(syntenet,intraspecies_synteny)
importFrom(utils,head)
importFrom(utils,read.table)
