geneDouble              Example list of a background set and two sets
                        of test genes to use for enrichment analysis.
geneMulti               Example list of a background set and multiple
                        sets of test genes to use for enrichment
                        analysis.
geneSingle              Example list of a background set and single set
                        of test genes to use for enrichment analysis.
pathwaysGMT             Named list of human pathway annotations
                        obtained from a GMT file.
pathwaysTXT             Example list of SAFE terms obtained from a TXT
                        file.
pathwaysXLSX            Example list of SAFE terms obtained from a XLSX
                        file.
plotDotPlot             Visualizes fedup enrichment and depletion
                        results using ggplot.
plotFemap               Draws a network representation of overlaps
                        among pathway enrichment results using
                        EnrichmentMap (EM) in Cytoscape.
prepInput               Prepares input gene list for runFedup.
readPathways            Returns a list of pathways from various file
                        formats.
runFedup                Runs pathway enrichment and depletion analysis
                        using a Fisher's exact test.
writeFemap              Writes an enrichment dataset file for use in
                        Cytoscape EnrichmentMap.
writePathways           Writes a set of pathways (list of vectors) to a
                        GMT file.
