# Generated by roxygen2: do not edit by hand

export("%>%")
export(calculate_geneSetRatio)
export(colorify)
export(file_extension)
export(filter_enrichment)
export(get_base_folder)
export(get_ppigraph)
export(get_string_ppi)
export(get_terms_by_keywords)
export(get_visNetwork)
export(hexcolor2rgba)
export(plot_ComplexHeatmap)
export(plot_EnhancedVolcano)
export(plot_gene_effectsize_ComplexHeatmap)
export(plot_genelists_overlap_upsetjs)
export(plot_splitdot)
export(plot_termtree)
export(process_string_input)
export(read_validate_genelist)
export(run_genelists_overlap)
export(run_geneset_enrichment)
export(scale_values_between)
export(set_significant_N_genes)
export(wrap_hovertip)
export(wrap_loader)
import(dplyr)
importFrom(AnnotationDbi,mapIds)
importFrom(ComplexHeatmap,Heatmap)
importFrom(ComplexHeatmap,HeatmapAnnotation)
importFrom(ComplexHeatmap,Legend)
importFrom(ComplexHeatmap,draw)
importFrom(DT,DTOutput)
importFrom(DT,JS)
importFrom(DT,datatable)
importFrom(DT,renderDT)
importFrom(EnhancedVolcano,EnhancedVolcano)
importFrom(InteractiveComplexHeatmap,InteractiveComplexHeatmapOutput)
importFrom(InteractiveComplexHeatmap,makeInteractiveComplexHeatmap)
importFrom(arrow,open_dataset)
importFrom(arrow,read_delim_arrow)
importFrom(arrow,write_parquet)
importFrom(dplyr,"%>%")
importFrom(dplyr,.data)
importFrom(dplyr,filter)
importFrom(dplyr,group_by)
importFrom(dplyr,left_join)
importFrom(dplyr,mutate)
importFrom(dplyr,rename)
importFrom(dplyr,select)
importFrom(dplyr,slice_min)
importFrom(dplyr,ungroup)
importFrom(enrichplot,pairwise_termsim)
importFrom(enrichplot,treeplot)
importFrom(ggplot2,aes)
importFrom(ggplot2,coord_cartesian)
importFrom(ggplot2,element_line)
importFrom(ggplot2,element_rect)
importFrom(ggplot2,element_text)
importFrom(ggplot2,facet_wrap)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,ggplot_build)
importFrom(ggplot2,ggsave)
importFrom(ggplot2,labs)
importFrom(ggplot2,scale_color_gradient)
importFrom(ggplot2,scale_size_continuous)
importFrom(ggplot2,scale_x_continuous)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_minimal)
importFrom(goat,filter_genesets)
importFrom(goat,load_genesets_gmtfile)
importFrom(goat,load_genesets_go_bioconductor)
importFrom(goat,test_genesets)
importFrom(grDevices,col2rgb)
importFrom(grDevices,colorRamp)
importFrom(grDevices,dev.off)
importFrom(grDevices,hsv)
importFrom(grDevices,pdf)
importFrom(grDevices,png)
importFrom(grDevices,rgb)
importFrom(grDevices,rgb2hsv)
importFrom(graphics,par)
importFrom(graphics,pie)
importFrom(graphics,rect)
importFrom(graphics,text)
importFrom(grid,gpar)
importFrom(htmltools,div)
importFrom(htmltools,tags)
importFrom(igraph,E)
importFrom(igraph,V)
importFrom(igraph,assortativity_degree)
importFrom(igraph,betweenness)
importFrom(igraph,centr_betw)
importFrom(igraph,centr_clo)
importFrom(igraph,centr_degree)
importFrom(igraph,centr_eigen)
importFrom(igraph,closeness)
importFrom(igraph,cluster_leiden)
importFrom(igraph,constraint)
importFrom(igraph,degree)
importFrom(igraph,diversity)
importFrom(igraph,edge_attr)
importFrom(igraph,edge_betweenness)
importFrom(igraph,edge_density)
importFrom(igraph,empty_graph)
importFrom(igraph,graph.attributes)
importFrom(igraph,graph_center)
importFrom(igraph,graph_from_data_frame)
importFrom(igraph,is_igraph)
importFrom(igraph,knn)
importFrom(igraph,mean_distance)
importFrom(igraph,membership)
importFrom(igraph,modularity)
importFrom(igraph,set_edge_attr)
importFrom(igraph,set_graph_attr)
importFrom(igraph,set_vertex_attr)
importFrom(igraph,transitivity)
importFrom(igraph,vertex_attr)
importFrom(methods,is)
importFrom(methods,new)
importFrom(openxlsx,read.xlsx)
importFrom(openxlsx,write.xlsx)
importFrom(org.Ce.eg.db,org.Ce.eg.db)
importFrom(org.Dm.eg.db,org.Dm.eg.db)
importFrom(org.Dr.eg.db,org.Dr.eg.db)
importFrom(org.Hs.eg.db,org.Hs.eg.db)
importFrom(org.Mm.eg.db,org.Mm.eg.db)
importFrom(org.Mmu.eg.db,org.Mmu.eg.db)
importFrom(org.Pt.eg.db,org.Pt.eg.db)
importFrom(org.Rn.eg.db,org.Rn.eg.db)
importFrom(plotly,event_data)
importFrom(plotly,ggplotly)
importFrom(plotly,plotlyOutput)
importFrom(plotly,renderPlotly)
importFrom(plyr,mapvalues)
importFrom(purrr,map_chr)
importFrom(purrr,pmap_dbl)
importFrom(purrr,set_names)
importFrom(purrr,walk)
importFrom(rlang,.data)
importFrom(shiny,actionButton)
importFrom(shiny,addResourcePath)
importFrom(shiny,checkboxInput)
importFrom(shiny,column)
importFrom(shiny,downloadButton)
importFrom(shiny,downloadHandler)
importFrom(shiny,fileInput)
importFrom(shiny,fluidRow)
importFrom(shiny,icon)
importFrom(shiny,isolate)
importFrom(shiny,modalDialog)
importFrom(shiny,numericInput)
importFrom(shiny,observe)
importFrom(shiny,observeEvent)
importFrom(shiny,plotOutput)
importFrom(shiny,radioButtons)
importFrom(shiny,reactiveVal)
importFrom(shiny,reactiveValues)
importFrom(shiny,renderPlot)
importFrom(shiny,renderText)
importFrom(shiny,req)
importFrom(shiny,selectInput)
importFrom(shiny,showModal)
importFrom(shiny,showNotification)
importFrom(shiny,textAreaInput)
importFrom(shiny,textInput)
importFrom(shiny,textOutput)
importFrom(shiny,updateSelectInput)
importFrom(shiny,verbatimTextOutput)
importFrom(shinydashboard,box)
importFrom(shinydashboard,dashboardBody)
importFrom(shinydashboard,dashboardHeader)
importFrom(shinydashboard,dashboardPage)
importFrom(shinydashboard,dashboardSidebar)
importFrom(shinydashboard,menuItem)
importFrom(shinydashboard,menuSubItem)
importFrom(shinydashboard,sidebarMenu)
importFrom(shinydashboard,tabItem)
importFrom(shinydashboard,tabItems)
importFrom(shinydashboard,updateTabItems)
importFrom(shinyjqui,jqui_resizable)
importFrom(shinyjs,disable)
importFrom(shinyjs,disabled)
importFrom(shinyjs,enable)
importFrom(shinyjs,hidden)
importFrom(shinyjs,hide)
importFrom(shinyjs,runjs)
importFrom(shinyjs,show)
importFrom(shinyjs,useShinyjs)
importFrom(stats,alias)
importFrom(stats,cutree)
importFrom(stats,dist)
importFrom(stats,hclust)
importFrom(stats,reorder)
importFrom(stats,runif)
importFrom(stats,setNames)
importFrom(tibble,as_tibble)
importFrom(tibble,column_to_rownames)
importFrom(tibble,tibble)
importFrom(tidyr,unnest)
importFrom(upsetjs,chartTheme)
importFrom(upsetjs,generateDistinctIntersections)
importFrom(upsetjs,generateIntersections)
importFrom(upsetjs,generateUnions)
importFrom(upsetjs,interactiveChart)
importFrom(upsetjs,upsetjs)
importFrom(upsetjs,upsetjsOutput)
importFrom(utils,browseURL)
importFrom(utils,combn)
importFrom(utils,download.file)
importFrom(utils,head)
importFrom(utils,read.table)
importFrom(utils,tail)
importFrom(utils,write.csv2)
importFrom(utils,zip)
importFrom(visNetwork,renderVisNetwork)
importFrom(visNetwork,visEdges)
importFrom(visNetwork,visEvents)
importFrom(visNetwork,visExport)
importFrom(visNetwork,visIgraphLayout)
importFrom(visNetwork,visInteraction)
importFrom(visNetwork,visNetwork)
importFrom(visNetwork,visNetworkOutput)
importFrom(visNetwork,visNetworkProxy)
importFrom(visNetwork,visNodes)
importFrom(visNetwork,visOptions)
importFrom(visNetwork,visPhysics)
importFrom(visNetwork,visSetSelection)
importFrom(visNetwork,visUpdateEdges)
importFrom(visNetwork,visUpdateNodes)
