Package: goatea
Type: Package
Title: Interactive Exploration of GSEA by the GOAT Method
Version: 2.0.0
Authors@R: 
    person("Maurits", "Unkel",
		   role = c("aut", "cre", "fnd", "cph"),
		   email = "mauritsunkel@gmail.com",
		   comment = c(ORCID = "0000-0003-1920-6001"))
Description: Geneset Ordinal Association Test Enrichment Analysis
        (GOATEA) provides a 'Shiny' interface with interactive
        visualizations and utility functions for performing and
        exploring automated gene set enrichment analysis using the
        'GOAT' package. 'GOATEA' is designed to support large-scale and
        user-friendly enrichment workflows across multiple gene lists
        and comparisons, with flexible plotting and output options.
        Visualizations pre-enrichment include interactive 'Volcano' and
        'UpSet' (overlap) plots. Visualizations post-enrichment include
        interactive geneset dotplot, geneset treeplot, gene-effectsize
        heatmap, gene-geneset heatmap and 'STRING' database of
        protein-protein-interactions network graph. 'GOAT' reference:
        Frank Koopmans (2024) <doi:10.1038/s42003-024-06454-5>.
URL: https://github.com/mauritsunkel/goatea,
        https://mauritsunkel.github.io/goatea/
BugReports: https://github.com/mauritsunkel/goatea/issues
License: Apache License (>= 2)
Encoding: UTF-8
LazyData: false
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.3
Config/testthat/edition: 3
biocViews: GeneSetEnrichment, NetworkEnrichment, Visualization,
        ShinyApps, GUI, Transcriptomics, Genetics, FunctionalGenomics,
        DifferentialExpression, Network
Depends: R (>= 4.5.0), dplyr (>= 1.1.4)
Imports: goat (>= 1.0), shiny (>= 1.10.0), shinyjs (>= 2.1.0),
        shinyjqui (>= 0.4.1), shinydashboard (>= 0.7.2), openxlsx (>=
        4.2.7.1), upsetjs (>= 1.11.1), data.table (>= 1.18.2.1),
        ComplexHeatmap (>= 2.24.0), InteractiveComplexHeatmap (>=
        1.12.0), tidyr (>= 1.3.1), purrr (>= 1.0.2), ggplot2 (>=
        3.5.1), plotly (>= 4.10.4), igraph (>= 2.1.4), visNetwork (>=
        2.1.2), arrow (>= 18.1.0.1), htmltools (>= 0.5.8.1), methods
        (>= 4.5.0), AnnotationDbi (>= 1.69.1), DT (>= 0.33), plyr (>=
        1.8.9), tibble (>= 3.2.1), rlang (>= 1.1.6), DOSE (>= 4.4.0),
        enrichplot (>= 1.30.4), clusterProfiler (>= 4.18.4),
        EnhancedVolcano (>= 1.28.2), org.Hs.eg.db (>= 3.22.0),
        org.Mm.eg.db (>= 3.22.0), org.Dm.eg.db (>= 3.22.0),
        org.Mmu.eg.db (>= 3.22.0), org.Rn.eg.db (>= 3.22.0),
        org.Ce.eg.db (>= 3.22.0), org.Pt.eg.db (>= 3.22.0),
        org.Dr.eg.db (>= 3.22.0)
Suggests: knitr, rmarkdown, BiocStyle, magick
VignetteBuilder: knitr
Config/pak/sysreqs: libcairo2-dev cmake libfontconfig1-dev
        libfreetype6-dev libfribidi-dev libglpk-dev make
        libharfbuzz-dev libicu-dev libpng-dev libuv1-dev libxml2-dev
        libssl-dev perl zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2026-04-28 13:05:29 UTC
RemoteUrl: https://github.com/bioc/goatea
RemoteRef: RELEASE_3_23
RemoteSha: 8b7ad774dd2de11debf941e0fe52c32287aa179f
NeedsCompilation: no
Packaged: 2026-04-29 22:17:39 UTC; root
Author: Maurits Unkel [aut, cre, fnd, cph] (ORCID:
    <https://orcid.org/0000-0003-1920-6001>)
Maintainer: Maurits Unkel <mauritsunkel@gmail.com>
Built: R 4.6.0; ; 2026-04-29 23:28:33 UTC; unix
