annot_from_gr           Annotate sites using GRanges object
annot_snps              Annotate known SNP positions
calc_AEI                Calculate the Adenosine Editing Index (AEI)
calc_confidence         Calculate confidence score for observing
                        editing
calc_edit_frequency     Adds editing frequencies
calc_scAEI              Calculate the Adenosine Editing Index (AEI) in
                        single cells
correct_strand          Apply strand correction using gene annotations
filter_clustered_variants
                        Filter out clustered sequence variants
filter_multiallelic     Filter out multi-allelic sites
filter_splice_variants
                        Filter out sites near splice sites
find_de_sites           Perform differential editing
find_mispriming_sites   Find regions with oligodT mispriming
find_scde_sites         Identify sites with differential editing
                        between cells in single cell datasets
get_overlapping_snps    Retrieve SNPs overlapping intervals
get_splice_sites        Extract regions surrounding splice sites
make_de_object          Make summarized experiment object for
                        differential editing analysis
mock_rse                Generate a small RangedSummarizedExperiment
                        object for tests and examples
pileup_cells            Generate base counts per cell
pileup_sites            Generate base counts using pileup
raer_example            Provide working directory for raer example
                        files.
read_sparray            Read sparseMatrix produced by pileup_cells()
