Package: rqt
Type: Package
Title: rqt: utilities for gene-level meta-analysis
Version: 1.38.0
Authors@R: c(person("Ilya", "Zhbannikov", email = "ilya.zhbannikov@duke.edu", role = c("aut", "cre")), 
             person("Konstantin", "Arbeev", role = c("aut")), 
             person("Anatoliy", "Yashin", role = c("aut")))
Description: Despite the recent advances of modern GWAS methods, it
        still remains an important problem of addressing calculation an
        effect size and corresponding p-value for the whole gene rather
        than for single variant. The R- package rqt offers gene-level
        GWAS meta-analysis. For more information, see: "Gene-set
        association tests for next-generation sequencing data" by Lee
        et al (2016), Bioinformatics, 32(17), i611-i619,
        <doi:10.1093/bioinformatics/btw429>.
URL: https://github.com/izhbannikov/rqt
BugReports: https://github.com/izhbannikov/rqt/issues
License: GPL
RoxygenNote: 7.3.2
Suggests: BiocStyle, knitr, rmarkdown
VignetteBuilder: knitr
Imports:
        stats,Matrix,ropls,methods,car,RUnit,metap,CompQuadForm,glmnet,utils,pls
Depends: R (>= 3.4), SummarizedExperiment
Encoding: UTF-8
biocViews: GenomeWideAssociation, Regression, Survival,
        PrincipalComponent, StatisticalMethod, Sequencing
Config/pak/sysreqs: cmake libfftw3-dev make libicu-dev libuv1-dev
        libssl-dev zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2026-04-28 12:45:13 UTC
RemoteUrl: https://github.com/bioc/rqt
RemoteRef: RELEASE_3_23
RemoteSha: 48e32d5d8593b4b68430c8ccec4d4014154fd36f
NeedsCompilation: no
Packaged: 2026-04-30 06:11:54 UTC; root
Author: Ilya Zhbannikov [aut, cre],
  Konstantin Arbeev [aut],
  Anatoliy Yashin [aut]
Maintainer: Ilya Zhbannikov <ilya.zhbannikov@duke.edu>
Built: R 4.6.0; ; 2026-04-30 06:38:35 UTC; unix
