ASpliSE                 ASpliSE
BamtoAspliCounts        Converting BAM files to an
                        ASpli-SummarizedExperiment, which contains
                        gene, bin and junction counts.
calculateOffsets        calculating the offsets to perform aberrant
                        expression or splicing analysis.
convertASpli            Converting SummarizedExperiment with different
                        ASpli-counts to gene, bin or junction level
                        counts.
features                features
saseRExample            saseRExample
saseRfindEncodingDim    Determine the optimal number of latent factors
                        to detect outlier gene expression or splicing
saseRfit                Searching for aberrant expression or splicing.
SEbins                  SEbins
SEgenes                 SEgenes
SEjunctions             SEjunctions
