R: Counting Reads in High-Throughput Sequencing Screens

# Counting Reads in High-Throughput Sequencing Screens

## Documentation for package ‘screenCounter’ version 1.12.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

screenCounter-package | The screenCounter package
combineComboCounts | Combine combinatorial barcode counts
countComboBarcodes | Count combinatorial barcodes
countDualBarcodes | Count dual barcodes
countDualBarcodesSingleEnd | Count dual barcodes in single-end data
countPairedComboBarcodes | Count paired-end combinatorial barcodes
countRandomBarcodes | Count random barcodes
countSingleBarcodes | Count single barcodes
matchBarcodes | Match sequences to a pool of barcodes
matrixOfComboBarcodes | Count combinatorial barcodes
matrixOfDualBarcodes | Count dual barcodes
matrixOfDualBarcodesSingleEnd | Count dual barcodes in single-end data
matrixOfPairedComboBarcodes | Count paired-end combinatorial barcodes
matrixOfRandomBarcodes | Count random barcodes
matrixOfSingleBarcodes | Count single barcodes
parseBarcodeTemplate | Parse barcode template