# Generated by roxygen2: do not edit by hand

S3method(print,DMLSummary)
S3method(print,fileSet)
export(BetaValueToMValue)
export(DML)
export(DMLpredict)
export(DMR)
export(ELBAR)
export(MValueToBetaValue)
export(SigDF)
export(addMask)
export(betasCollapseToPfx)
export(bisConversionControl)
export(calcEffectSize)
export(checkLevels)
export(cnSegmentation)
export(compareMouseStrainReference)
export(compareReference)
export(controls)
export(createUCSCtrack)
export(deIdentify)
export(detectionPnegEcdf)
export(diffRefSet)
export(dmContrasts)
export(dyeBiasCorr)
export(dyeBiasCorrMostBalanced)
export(dyeBiasCorrTypeINorm)
export(dyeBiasL)
export(dyeBiasNL)
export(estimateLeukocyte)
export(formatVCF)
export(getAFTypeIbySumAlleles)
export(getAFs)
export(getBetas)
export(getMask)
export(getRefSet)
export(imputeBetas)
export(imputeBetasByGenomicNeighbors)
export(imputeBetasMatrixByMean)
export(inferInfiniumIChannel)
export(inferSex)
export(inferSpecies)
export(inferStrain)
export(inferTissue)
export(initFileSet)
export(listAvailableMasks)
export(mLiftOver)
export(mapFileSet)
export(mapToMammal40)
export(matchDesign)
export(meanIntensity)
export(medianTotalIntensity)
export(noMasked)
export(noob)
export(openSesame)
export(openSesameToFile)
export(pOOBAH)
export(palgen)
export(parseGEOsignalMU)
export(predictAge)
export(prefixMask)
export(prefixMaskButC)
export(prefixMaskButCG)
export(prepSesame)
export(prepSesameList)
export(probeID_designType)
export(probeSuccessRate)
export(qualityMask)
export(reIdentify)
export(readFileSet)
export(readIDATpair)
export(recommendedMaskNames)
export(resetMask)
export(scrub)
export(scrubSoft)
export(sdfPlatform)
export(sdf_read_table)
export(sdf_write_table)
export(searchIDATprefixes)
export(sesameAnno_attachManifest)
export(sesameAnno_buildAddressFile)
export(sesameAnno_buildManifestGRanges)
export(sesameAnno_download)
export(sesameAnno_readManifestTSV)
export(sesameQC_calcStats)
export(sesameQC_getStats)
export(sesameQC_plotBar)
export(sesameQC_plotBetaByDesign)
export(sesameQC_plotHeatSNPs)
export(sesameQC_plotIntensVsBetas)
export(sesameQC_plotRedGrnQQ)
export(sesameQC_rankStats)
export(sesameQCtoDF)
export(sesame_checkVersion)
export(setMask)
export(signalMU)
export(sliceFileSet)
export(summaryExtractTest)
export(totalIntensities)
export(updateSigDF)
export(visualizeGene)
export(visualizeProbes)
export(visualizeRegion)
export(visualizeSegments)
import(BiocParallel)
import(ggplot2)
import(graphics)
import(grid)
import(sesameData)
import(stats)
import(stringr)
import(tibble)
import(wheatmap)
importFrom(BiocFileCache,BiocFileCache)
importFrom(BiocFileCache,bfcrpath)
importFrom(GenomicRanges,GRanges)
importFrom(GenomicRanges,end)
importFrom(GenomicRanges,findOverlaps)
importFrom(GenomicRanges,resize)
importFrom(GenomicRanges,seqinfo)
importFrom(GenomicRanges,seqnames)
importFrom(GenomicRanges,start)
importFrom(S4Vectors,metadata)
importFrom(S4Vectors,queryHits)
importFrom(S4Vectors,subjectHits)
importFrom(Seqinfo,Seqinfo)
importFrom(SummarizedExperiment,"metadata<-")
importFrom(SummarizedExperiment,SummarizedExperiment)
importFrom(SummarizedExperiment,assay)
importFrom(SummarizedExperiment,colData)
importFrom(SummarizedExperiment,rowData)
importFrom(dplyr,bind_cols)
importFrom(dplyr,bind_rows)
importFrom(dplyr,distinct)
importFrom(dplyr,full_join)
importFrom(dplyr,group_by)
importFrom(dplyr,slice_min)
importFrom(dplyr,summarize)
importFrom(methods,.hasSlot)
importFrom(methods,is)
importFrom(methods,new)
importFrom(preprocessCore,normalize.quantiles.use.target)
importFrom(readr,col_character)
importFrom(readr,col_integer)
importFrom(readr,cols)
importFrom(readr,read_tsv)
importFrom(reshape2,melt)
importFrom(stats,approx)
importFrom(stats,setNames)
importFrom(utils,download.file)
importFrom(utils,head)
importFrom(utils,packageVersion)
importFrom(utils,read.table)
importFrom(utils,tail)
importFrom(utils,write.table)
importMethodsFrom(IRanges,subsetByOverlaps)
