addFeatureStats         Add feature statistics
convert_to_SCE          Convert Sparse Matrix to SingleCellExperiment
                        object
getCounts               Get counts from Single Cell Experiment object
global                  simPIC: Simulate single-cell ATAC-seq data
newsimPICcount          newsimPICcount
plot_theme              Custom theme for ggplot2
rbindMatched            Bind rows (matched)
selectFit               Select fit
setsimPICparameters     Set simPIC parameters
simPICcompare           Compare SingleCellExperiment objects
simPICcount             The simPICcount class
simPICEstBCV            Estimate simPIC Biological Coefficient of
                        Variation parameters
simPICestimate          Estimate simPIC simulation parameters
simPICestimateLibSize   Estimate simPIC library size parameters.
simPICestimatePeakMean
                        Estimate simPIC peak means
simPICestimateSparsity
                        Estimate sparsity.
simPICget               Get a single simPICcount parameter
simPICgetparameters     Get parameters
simPICsimCellMeans      Simulate cell means
simPICsimulate          simPIC simulation
simPICsimulateBCVMeans
                        Simulate BCV means
simPICsimulateLibSize   Simulate simPIC library sizes
simPICsimulatemultiDA   Simulate group differential accessibility
simPICsimulatePeakMean
                        Simulate simPIC peak means.
simPICsimulateTrueCounts
                        Simulate true counts.
simPICsimulateTrueCountsGroups
                        Simulate true counts groups.
