drosophila_gpsim_fragment
                        Fragment of 12 time point Drosophila embryonic
                        development microarray gene expression time
                        series
drosophila_mmgmos_fragment
                        Fragment of 12 time point Drosophila embryonic
                        development microarray gene expression time
                        series
export.scores           Export results to an SQLite database
ExpressionTimeSeries-class
                        Class to contain time series expression assays
expTransform            Constrains a parameter.
generateModels          Generating models with the given data
GPLearn                 Fit a GP model
GPModel-class           A container for gpsim models
GPPlot                  Plot GP(DI)SIM models
GPRankTargets           Ranking possible target genes or regulators
gpsimCreate             Create a GPSIM/GPDISIM model.
kernCompute             Compute the kernel given the parameters and X.
kernCreate              Initialise a kernel structure.
kernDiagGradX           Compute the gradient of the kernel wrt X.
kernGradient            Compute the gradient wrt the kernel parameters.
lnDiffErfs              Helper function for computing the log of
                        difference
modelDisplay            Display a model.
modelExpandParam        Update a model structure with new parameters or
                        update the posterior processes.
modelExtractParam       Extract the parameters of a model.
modelGradient           Model log-likelihood/objective error function
                        and its gradient.
modelTieParam           Tie parameters of a model together.
optimiDefaultConstraint
                        Returns function for parameter constraint.
plotTimeseries          Plot ExpressionTimeSeries data
processData             Processing expression time series
SCGoptim                Optimise the given function using (scaled)
                        conjugate gradients.
scoreList-class         Class "scoreList"
tigre-package           tigre - Transcription factor Inference through
                        Gaussian process Reconstruction of Expression
