autoSPIN                A wrapper function for autoSPIN sorting method
clusterGenes1           A modified monocle's function
compareModels1          A modified monocle's function
diff_test_helper1       A modified monocle's helper function
differentialGeneTest1   differential gene test
distance.function       A distance function A distance function
                        computes cell-to-cell distance matrix.
driving_force_gene_selection
                        A feature/ gene selection function
elbow_detection         A elbow detection function
EXP_to_CellDataSet      A function for constructing a Monocle's
                        CellDataSet object from an expression matrix
fluidigmSC_analyzeGeneDetection
                        A gene detection function
fluidigmSC_identifyExpOutliers
                        An outlier detection function
fluidigmSC_isElementIgnoreCase
                        A gene finding function
fluidigmSC_readLinearExp
                        An expression reading function
fluidigmSC_removeGenesByLinearExpForAllType
                        A gene trimming function
fluidigmSC_removeGenesByLinearExpForAllType_log2
                        A gene trimming function
monocle_wrapper         A wrapper function for Monocle sorting method
neighborhood_sorting    A sorting function using the Neighborhood
                        algorithm
neighborhood_sorting_wrapper
                        A wrapper function for Neighborhood sorting.
neighborhood_sortingcost
                        A cost computation function for Neighborhood
                        algorithm
pca_gene_selection      Gene selection using PCA technique
Rwanderlust             R inplementation of wanderlust
scattering_quantification_per_gene
                        An expression scattering measurement function
sorting_method_parameter_GUI
                        GUI for sorting method paramters
SPIN                    A wrapper function for SPIN sorting method
STS_sorting             A sorting function using the Side-to-Side (STS)
                        algorithm
STS_sorting_wrapper     A wrapper function for Side-to-Side (STS)
                        sorting.
STS_sortingcost         A cost computation function for Side-to-Side
                        (STS) algorithm
summed_local_variance   A summed local variance function
summed_local_variance_cyclical
                        A summed local variance function for cyclical
                        linear data type
summed_local_variance_linear
                        A summed local variance function for strictly
                        linear data type
sWanderlust             sWanderlust
trajectory_landmarks    determining initial trajectory and landmarks
uSORT                   uSORT: A self-refining ordering pipeline for
                        gene selection
uSORT_GUI               The user friendly GUI for 'uSORT-package'
uSORT_parameters_GUI    The GUI for inputting paramters for uSORT
uSORT_preProcess        A data loading and pre-processing function
uSORT_sorting_wrapper   wrapper of all avaliable sorting methods in
                        uSORT
uSORT_write_results     Resluts parsing for uSORT
variability_per_gene    A utility function for
                        scattering_quantification_per_gene
wanderlust_wrapper      a wrapper of wanderlust for sWanderlust
