R: A CAusal Reasoning tool for Network Identification (from gene expression data) using Integer VALue programming

# A CAusal Reasoning tool for Network Identification (from gene expression data) using Integer VALue programming

## Documentation for package ‘CARNIVAL’ version 2.22.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

checkOptionsValidity | Checks if provided option names are valid.
defaultCbcSolveCarnivalOptions | Sets default CARNIVAL options for cbc.
defaultCplexCarnivalOptions | Sets default CARNIVAL options for cplex.
defaultCplexSpecificOptions | Sets default options from cplex documentation.
defaultLpSolveCarnivalOptions | Sets default CARNIVAL options for lpSolve.
generateLpFileCarnival | 'generateLpFileCarnival'
getOptionsList | Returns the list of options needed/supported for each solver.
getSupportedSolvers | Returns the list of supported solvers.
isInputValidCarnival | Checks validity of all inputs of CARNIVAL
parseCplexLog | Parses the cplex log file and reads some basic information.
runCARNIVAL | 'runCARNIVAL'
runFromLpCarnival | 'runCarnivalFromLp'
runInverseCarnival | 'runInverseCarnival'
runVanillaCarnival | 'runVanillaCarnival'
setCarnivalOptions | Sets CARNIVAL options for the solver.
suggestedCbcSpecificOptions | Suggests cbc specific options.
suggestedCplexSpecificOptions | Suggests cplex specific options.s
writeCplexCommandFileFromJson | writeCplexCommandFileFromJson