ChIPXpress              ChIPXpress Ranking
ChIPXpress-package      ChIPXpress ranks TF target genes given
                        predicted TF targets from ChIP-chip and
                        ChIP-seq data using publicly available gene
                        expression data
Oct4ESC_ChIPgenes       Predicted Oct4 bound genes in embryonic stem
                        cells (ESC) obtained from analyzing ChIP-seq
                        data
buildDatabase           Builds a new database of gene expression
                        profiles from a specified platform or sample
                        files in NCBI GEO.
cleanDatabase           Cleans the annotated output from buildDatabase
                        to the required format for ChIPXpress analyses
