R: Exposure-Aware Multi-Omics Risk Modeling

# Exposure-Aware Multi-Omics Risk Modeling

## Documentation for package ‘ExpoRiskR’ version 1.0.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

align_omics | Align exposures and multi-omics blocks by sample ID
align_omics_se | Align two SummarizedExperiment objects and extract exposures from colData
build_exposure_network | Build an exposure-adjusted microbe-metabolite association network
exposure_perturbation_score | Score exposures by network perturbation (leave-one-exposure-out)
generate_dummy_exporisk | Generate simulated exposure + multi-omics data with a binary outcome
plot_exposure_network | Plot exposure-adjusted multi-omics network (bipartite)
plot_exposure_ranking | Plot exposure perturbation ranking
plot_feature_importance | Plot feature importance for exposures (logistic regression)
plot_individual_risk_profile | Plot individual risk profile from exposure model
plot_network_stability | Plot network stability by bootstrap edge overlap
plot_risk_roc | Plot disease risk stratification ROC curves (MVP)
prep_omics | Preprocess exposures and multi-omics blocks for modeling
prep_omics_se | Preprocess SummarizedExperiment-based omics blocks and exposures