Package: ExpoRiskR
Type: Package
Title: Exposure-Aware Multi-Omics Risk Modeling
Version: 1.0.0
Authors@R: c(
    person("Prem Prashant", "Chaudhary",
           email = "chaudharyp2@nih.gov",
           role = c("aut", "cre"),
           comment = c(ORCID = "0000-0002-3467-8608"))
 )
Description: ExpoRiskR provides tools for exposure-aware multi-omics risk modeling
    in translational and environmental health studies. The package aligns sample
    identifiers across exposure and multi-omics blocks, performs lightweight
    preprocessing, and fits exposure-adjusted association models to build
    interpretable microbe–metabolite networks. It also computes simple exposure
    perturbation summaries and generates publication-ready visualizations.
    Workflows support both matrix-based inputs and SummarizedExperiment objects.
License: MIT + file LICENSE
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
URL: https://github.com/ppchaudhary/ExpoRiskR
BugReports: https://github.com/ppchaudhary/ExpoRiskR/issues
Imports: stats, ggplot2, igraph, SummarizedExperiment, S4Vectors, utils
Suggests: BiocStyle, BiocCheck, knitr, rmarkdown, withr, testthat (>=
        3.0.0)
VignetteBuilder: knitr
Config/testthat/edition: 3
biocViews: Software, Network, SystemsBiology, Metabolomics, Microbiome,
        Regression
git_url: https://git.bioconductor.org/packages/ExpoRiskR
git_branch: RELEASE_3_23
git_last_commit: 59ff42f
git_last_commit_date: 2026-04-28
Repository: Bioconductor 3.23
Date/Publication: 2026-04-28
NeedsCompilation: no
Packaged: 2026-04-28 22:08:10 UTC; biocbuild
Author: Prem Prashant Chaudhary [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-3467-8608>)
Maintainer: Prem Prashant Chaudhary <chaudharyp2@nih.gov>
Built: R 4.6.0; ; 2026-04-29 04:42:29 UTC; unix
