FRASER                  FRASER: Find RAre Splicing Events in RNA-seq
                        data
FraserDataSet           The FRASER dataset object
FraserDataSet-class     FraserDataSet
K                       Getter/setter for count data
annotateRanges          Annotates the given FraserDataSet with the HGNC
                        symbol with biomaRt
assayNames,FraserDataSet-method
                        Returns the assayNames of FRASER
assays,FraserDataSet-method
                        Returns the assay for the given name/index of
                        the FraserDataSet
calculatePSIValues      PSI value calculation
countRNA                Count RNA-seq data
createTestFraserSettings
                        Create a test dataset
estimateBestQ           Find optimal encoding dimension
filterVariability       Filtering FraserDataSets
fit                     Fitting the denoising autoencoder
getter_setter_functions
                        Getter/Setter functions
injectOutliers          Inject artificial outliers in an existing fds
length,FraserDataSet-method
                        retrieve the length of the object (aka number
                        of junctions)
loadFraserDataSet       Loading/Saving FraserDataSets
makeSimulatedFraserDataSet
                        Create an simulated example data set for FRASER
mergeExternalData       Merge external data
plotManhattan           Visualization functions for FRASER
potentialImpactAnnotations
                        Additional result annotations
psiTypes                Available splice metrics
results,FraserDataSet-method
                        Extracting results and aberrant splicing events
samples                 Getter/Setter methods for the FraserDataSet
subset.FRASER           Subsetting by indices for junctions
