Package: GeneNetworkBuilder
Type: Package
Version: 1.54.0
Title: GeneNetworkBuilder: a bioconductor package for building
        regulatory network using ChIP-chip/ChIP-seq data and Gene
        Expression Data
Authors@R: c(person("Jianhong Ou", "Developer", role = c("aut", "cre"),
        email = "jou@morgridge.org"), person("Lihua Julie Zhu",
        "Developer", role = "aut", email = "Julie.Zhu@umassmed.edu"))
Author: Jianhong Ou, Haibo Liu, Heidi A Tissenbaum and Lihua Julie Zhu
Maintainer: Jianhong Ou <jou@morgridge.org>
Imports: plyr, graph, htmlwidgets, Rgraphviz, RCy3, rjson, XML,
        methods, grDevices, stats, graphics
Depends: R (>= 2.15.1), Rcpp (>= 0.9.13)
Suggests: RUnit, BiocGenerics, RBGL, knitr, shiny, STRINGdb, BiocStyle,
        magick, rmarkdown, org.Hs.eg.db
LinkingTo: Rcpp
Description: Appliation for discovering direct or indirect targets of
    transcription factors using ChIP-chip or ChIP-seq, and
    microarray or RNA-seq gene expression data. Inputting a list of
    genes of potential targets of one TF from ChIP-chip or
    ChIP-seq, and the gene expression results, GeneNetworkBuilder
    generates a regulatory network of the TF.
License: GPL (>= 2)
Lazyload: yes
LazyData: true
biocViews: Sequencing, Microarray, GraphAndNetwork
VignetteBuilder: knitr
RoxygenNote: 7.3.2
Encoding: UTF-8
git_url: https://git.bioconductor.org/packages/GeneNetworkBuilder
git_branch: RELEASE_3_23
git_last_commit: 4be7f39
git_last_commit_date: 2026-04-28
Repository: Bioconductor 3.23
Date/Publication: 2026-04-28
NeedsCompilation: yes
Packaged: 2026-04-28 22:16:42 UTC; biocbuild
Built: R 4.6.0; aarch64-apple-darwin23; 2026-04-29 04:44:12 UTC; unix
