Contacts                Contacts
HiContacts-plots        HiContacts plotting functionalities
arithmetics             HiContacts arithmetics functionalities
cisTransRatio           cisTransRatio
distanceLaw             Compute the law of distance-dependent contact
                        frequency, a.k.a. P(s)
getCompartments         Contact map compartments
getDiamondInsulation    Contact map insulation
getLoops                Finding loops in contact map
palettes                Matrix palettes
plot4C                  Plotting virtual 4C profiles
plotMatrix              Plotting a contact matrix
plotPs                  Plotting a P(s) distance law
plotSaddle              Plotting saddle plots
plotScalogram           Plotting scalograms
scalogram               Compute a scalogram of contacts
tracks                  Aligning tracks with HiCExperiment objects
virtual4C               Computing virtual 4C profiles
