attachList              Attaching one list at the end of another
calcPPS                 Calculation of a peak picking score (PPS) by
                        using natural, stable 13C isotopes
calculateXcmsSet        Calculation of an xcmsSet-Object
combineParams           Combining two lists of parameters together.
createModel             Creating a response surface model.
decode                  En-/decodes values to/from ranges of -1 to 1.
findIsotopes.CAMERA     Identification of Isotopes using the package
                        CAMERA.
findIsotopes.IPO        Identification of 13C isotopes
getBbdParameter         Creates a Box-Behnken Design of experiment
getCcdParameter         Creates a Central-Composite Design of
                        experiment
getDefaultRetCorCenterSample
                        Gets the index of the sample with most peaks in
                        it.
getDefaultRetGroupStartingParams
                        Gives a List of parameters for xcms-methods
                        retcor.obiwarp or retcor.loess and
                        group.density which are optimized by default
getDefaultXcmsSetStartingParams
                        Creates a List of parameters for xcms-methods
                        xcmsSet.findPeak which are optimized by default
getNormalizedResponse   It combines Retention time Correction Scores
                        (RCS) and Grouping Scores (GS)
getRGTVValues           Calculation of values used for a Retention time
                        correction and Grouping Target Value (RGTV)
IPO-package             Automated Optimization of Untargeted
                        Metabolomics LC-MS Data Processing
optimizeRetGroup        Optimization for parameters for retention time
                        correction and grouping
optimizeXcmsSet         Optimisation of peak picking parameters by
                        using natural, stable 13C isotopes
toMatrix                Converts an array into a matrix
typeCastParams          Splits parameters into those which should be
                        optimized and those which are fixed.
writeParamsTable        Writes XCMS settings to a file.
writeRScript            Prints an R-script to the screen which can be
                        used for xcms processing
