R: Identification of genetic Variants affecting Alternative Splicing

# Identification of genetic Variants affecting Alternative Splicing

## Documentation for package ‘IVAS’ version 2.32.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS

## Help Pages

IVAS-package | IVAS : Identification of genomic variants affecting Alternative Splicing
ASdb-class | ASdb s4 class - a container for results from functions of the 'IVAS' package.
calSignificant | Deprecated
CalSigSNP | Calculate significance SNPs
chrseparate | Separate a TxDb object based on a chromosome.
findAlternative | Find alternative exons of a gene.
findOversnp | Find SNPs which belong to alternative exons and flanking introns of them.
IVAS | IVAS : Identification of genomic variants affecting Alternative Splicing
IVAS-deprecated | Deprecated functions in package 'IVAS'
MsqtlFinder | Deprecated
RatioFromFPKM | Estimate relative expression ratio.
sampleexp | CEU expression data
samplesnp | CEU genotype data
samplesnplocus | snplocus
saveBplot | Save boxplots
Splicingfinder | Find alternatively spliced exons
sqtlfinder | Deprecated
sQTLsFinder | Find SQTLs.