Package: MsCoreUtils
Title: Core Utils for Mass Spectrometry Data
Version: 1.24.0
Description: MsCoreUtils defines low-level functions for mass
    spectrometry data and is independent of any high-level data
    structures. These functions include mass spectra processing
    functions (noise estimation, smoothing, binning, baseline
    estimation), quantitative aggregation functions (median polish,
    robust summarisation, ...), missing data imputation, data
    normalisation (quantiles, vsn, ...), misc helper functions, that
    are used across high-level data structure within the R for Mass
    Spectrometry packages.
Authors@R: c(person(given = "RforMassSpectrometry Package Maintainer",
                    email = "maintainer@rformassspectrometry.org",
                    role = "cre"),
             person(given = "Laurent", family = "Gatto",
                    email = "laurent.gatto@uclouvain.be",
                    comment = c(ORCID = "0000-0002-1520-2268"),
                    role = "aut"),
             person(given = "Johannes", family = "Rainer",
                    email = "Johannes.Rainer@eurac.edu",
                    comment = c(ORCID = "0000-0002-6977-7147"),
                    role = "aut"),
             person(given = "Sebastian", family = "Gibb",
                    email = "mail@sebastiangibb.de",
                    comment = c(ORCID = "0000-0001-7406-4443"),
                    role = "aut"),
             person(given = "Philippine", family = "Louail",
                    email = "philippine.louail@eurac.edu",
                    role = c("aut"),
                    comment = c(ORCID = "0009-0007-5429-6846")),
              person(given = "Adriano", family = "Rutz",
                    email = "rutz@imsb.biol.ethz.ch",
                    role = c("aut"),
                    comment = c(ORCID = "0000-0003-0443-9902")),
             person(given = "Adriaan", family = "Sticker", role = "ctb"),
             person(given = "Sigurdur", family = "Smarason", role = "ctb"),
             person(given = "Thomas", family = "Naake", role = "ctb"),
             person(given = "Josep Maria", family = "Badia Aparicio",
                    comment = c(ORCID = "0000-0002-5704-1124"),
                    role = "ctb"),
             person(given = "Michael", family = "Witting",
                    email = "michael.witting@helmholtz-muenchen.de",
                    role = "ctb",
                    comment = c(ORCID = "0000-0002-1462-4426")),
             person(given = "Samuel", family = "Wieczorek", role = "ctb"),
             person(given = "Roger", family = "Gine Bertomeu",
                    email = "roger.gine@iispv.cat",
                    comment = c(ORCID = "0000-0003-0288-9619"),
                    role = "ctb"),
             person(given = "Mar", family = "Garcia-Aloy",
                    email = "mar.garcia@fmach.it",
                    comment = c(ORCID = "0000-0002-1330-6610"),
                    role = "ctb"),
             person(given = "Gabriele", family = "Tomè",
                    email = "gabriele.tome@eurac.edu",
                    comment = c(ORCID = "0000-0002-3976-6068"),
                    role = "ctb"))
Depends: R (>= 3.6.0)
Imports: methods, S4Vectors, MASS, stats, clue
Suggests: testthat, knitr, BiocStyle, rmarkdown, roxygen2, imputeLCMD,
        impute, norm, pcaMethods, vsn, Matrix, preprocessCore,
        missForest, rlang
Enhances: HDF5Array
License: Artistic-2.0
Encoding: UTF-8
VignetteBuilder: knitr
LinkingTo: Rcpp
BugReports: https://github.com/RforMassSpectrometry/MsCoreUtils/issues
URL: https://github.com/RforMassSpectrometry/MsCoreUtils
biocViews: Infrastructure, Proteomics, MassSpectrometry, Metabolomics
Roxygen: list(markdown=TRUE)
RoxygenNote: 7.3.3
git_url: https://git.bioconductor.org/packages/MsCoreUtils
git_branch: RELEASE_3_23
git_last_commit: 5b13a9a
git_last_commit_date: 2026-04-28
Repository: Bioconductor 3.23
Date/Publication: 2026-04-28
NeedsCompilation: yes
Packaged: 2026-04-28 22:54:34 UTC; biocbuild
Author: RforMassSpectrometry Package Maintainer [cre],
  Laurent Gatto [aut] (ORCID: <https://orcid.org/0000-0002-1520-2268>),
  Johannes Rainer [aut] (ORCID: <https://orcid.org/0000-0002-6977-7147>),
  Sebastian Gibb [aut] (ORCID: <https://orcid.org/0000-0001-7406-4443>),
  Philippine Louail [aut] (ORCID:
    <https://orcid.org/0009-0007-5429-6846>),
  Adriano Rutz [aut] (ORCID: <https://orcid.org/0000-0003-0443-9902>),
  Adriaan Sticker [ctb],
  Sigurdur Smarason [ctb],
  Thomas Naake [ctb],
  Josep Maria Badia Aparicio [ctb] (ORCID:
    <https://orcid.org/0000-0002-5704-1124>),
  Michael Witting [ctb] (ORCID: <https://orcid.org/0000-0002-1462-4426>),
  Samuel Wieczorek [ctb],
  Roger Gine Bertomeu [ctb] (ORCID:
    <https://orcid.org/0000-0003-0288-9619>),
  Mar Garcia-Aloy [ctb] (ORCID: <https://orcid.org/0000-0002-1330-6610>),
  Gabriele Tomè [ctb] (ORCID: <https://orcid.org/0000-0002-3976-6068>)
Maintainer: RforMassSpectrometry Package Maintainer <maintainer@rformassspectrometry.org>
Built: R 4.6.0; aarch64-apple-darwin23; 2026-04-29 04:51:46 UTC; unix
