# Generated by roxygen2: do not edit by hand

export(areaUnderTic)
export(areaUnderTicRtQuantiles)
export(baselineIntensity)
export(calculateMetrics)
export(calculateMetricsFromChromatograms)
export(calculateMetricsFromMsExperiment)
export(calculateMetricsFromOneSampleChromatograms)
export(calculateMetricsFromOneSampleSpectra)
export(calculateMetricsFromSpectra)
export(chromatographyDuration)
export(extentIdentifiedPrecursorIntensity)
export(gaussianSimilarity)
export(intensityMean)
export(intensityQuartiles)
export(intensityRange)
export(intensitySd)
export(maxIntensity)
export(meanCharge)
export(medianCharge)
export(medianPrecursorMz)
export(medianTicOfRtRange)
export(medianTicRtIqr)
export(msSignal10xChange)
export(mzAcquisitionRange)
export(numberEmptyScans)
export(numberSpectra)
export(peakCount)
export(peakProminence)
export(peakWidth)
export(plotMetric)
export(plotMetricTibble)
export(precursorIntensityMean)
export(precursorIntensityQuartiles)
export(precursorIntensityRange)
export(precursorIntensitySd)
export(qualityMetrics)
export(ratioCharge1over2)
export(ratioCharge3over2)
export(ratioCharge4over2)
export(rtAcquisitionRange)
export(rtIqr)
export(rtIqrRate)
export(rtOverMsQuarters)
export(shinyMsQuality)
export(signalToNoiseRatio)
export(ticQuantileRtFraction)
export(ticQuartileToQuartileLogRatio)
export(transformIntoMzQC)
export(xicFwhm)
import(MsDataHub)
importFrom(BiocParallel,bplapply)
importFrom(BiocParallel,bpparam)
importFrom(Chromatograms,filterChromData)
importFrom(Chromatograms,intensity)
importFrom(Chromatograms,peakBoundary)
importFrom(MetaboCoreUtils,betaValues)
importFrom(MsCoreUtils,noise)
importFrom(MsExperiment,MsExperiment)
importFrom(MsExperiment,sampleData)
importFrom(ProtGenerics,filterMsLevel)
importFrom(ProtGenerics,intensity)
importFrom(ProtGenerics,ionCount)
importFrom(ProtGenerics,mz)
importFrom(ProtGenerics,precursorCharge)
importFrom(ProtGenerics,precursorIntensity)
importFrom(ProtGenerics,precursorMz)
importFrom(ProtGenerics,rtime)
importFrom(ProtGenerics,spectra)
importFrom(ProtGenerics,tic)
importFrom(Spectra,Spectra)
importFrom(Spectra,filterEmptySpectra)
importFrom(Spectra,filterIntensity)
importFrom(ggplot2,aes)
importFrom(ggplot2,element_blank)
importFrom(ggplot2,element_text)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,ggtitle)
importFrom(ggplot2,guide_legend)
importFrom(ggplot2,guides)
importFrom(ggplot2,scale_colour_brewer)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_bw)
importFrom(ggplot2,xlab)
importFrom(htmlwidgets,saveWidget)
importFrom(methods,is)
importFrom(plotly,ggplotly)
importFrom(plotly,partial_bundle)
importFrom(plotly,plotlyOutput)
importFrom(plotly,renderPlotly)
importFrom(rlang,sym)
importFrom(rmzqc,MzQCDateTime)
importFrom(rmzqc,MzQCinputFile)
importFrom(rmzqc,MzQCmetadata)
importFrom(rmzqc,MzQCmzQC)
importFrom(rmzqc,MzQCrunQuality)
importFrom(rmzqc,filenameToCV)
importFrom(rmzqc,getCVInfo)
importFrom(rmzqc,getCVTemplate)
importFrom(rmzqc,toAnalysisSoftware)
importFrom(rmzqc,toQCMetric)
importFrom(shiny,downloadButton)
importFrom(shiny,downloadHandler)
importFrom(shiny,fluidRow)
importFrom(shiny,reactive)
importFrom(shiny,req)
importFrom(shiny,runApp)
importFrom(shiny,selectInput)
importFrom(shiny,shinyUI)
importFrom(shinydashboard,dashboardBody)
importFrom(shinydashboard,dashboardHeader)
importFrom(shinydashboard,dashboardPage)
importFrom(shinydashboard,dashboardSidebar)
importFrom(stats,IQR)
importFrom(stats,approx)
importFrom(stats,median)
importFrom(stats,quantile)
importFrom(stats,sd)
importFrom(stats,setNames)
importFrom(stringr,str_remove)
importFrom(stringr,str_split)
importFrom(tibble,rownames_to_column)
importFrom(tidyr,pivot_longer)
importFrom(utils,packageDescription)
importFrom(utils,tail)
importMethodsFrom(Spectra,dataOrigin)
importMethodsFrom(Spectra,filterMsLevel)
importMethodsFrom(Spectra,ionCount)
importMethodsFrom(Spectra,rtime)
