R: R wrapper for the OMA REST API

# R wrapper for the OMA REST API

## Documentation for package ‘OmaDB’ version 2.28.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

OmaDB-package | OmaDB: A package for the orthology prediction data download from OMA database.
$.omadb_obj | Resolve URLs automatically when accessed
annotateSequence | Map GO annotation to a sequence that is not available in the OMA Browser
formatTopGO | Format the GO annotations data
getAttribute | Get the value for the Object Attribute
getGenome | Retrieve a genome from the OMA Browser database
getGenomePairs | Retrieves the pairwise relations among two genomes
getHOG | Retrieve a HOG from the OMA Browser
getLocus | Get loci for a given list of proteins
getObjectAttributes | Get the Object Attributes
getOMAGroup | Retrieve an OMA Group from the OMA Browser
getProtein | Retrieve a protein from the OMA Browser
getTaxonomy | Get the Taxonomic tree function
getTopGO | Get the topGO Object function
getTree | Get the Tree Object
getVersion | Get the API and database version function
group | An example OMA group object.
hog | An example HOG object.
mapSequence | Map the Protein Sequence Function
OmaDB | OmaDB: A package for the orthology prediction data download from OMA database.
orthologs | An example orthologs object.
pairs | An example genome alignment object.
protein | An example protein object.
resolveURL | Load data for a given url from the OMA Browser API.
searchProtein | Get the CrossReferences in the OMA database for a pattern
sequence_annotation | An example dataframe containing GO annotations identified from a given sequence.
sequence_map | An example dataframe containing proteins identified from a given sequence.
setAPI | Set the url to the OMA Browser API
taxonomy | An example newick format taxonomy object.
xref | An example xref object.