addAssay	QFeatures-class
addAssayLink	AssayLinks
addAssayLinkOneToOne	AssayLinks
adjacencyMatrix,QFeatures-method	QFeatures-aggregate
adjacencyMatrix,SummarizedExperiment-method	QFeatures-aggregate
adjacencyMatrix<-	QFeatures-aggregate
aggcounts	QFeatures-aggregate
aggcounts,SummarizedExperiment-method	QFeatures-aggregate
aggregateFeatures	QFeatures-aggregate
aggregateFeatures,QFeatures-method	QFeatures-aggregate
aggregateFeatures,SummarizedExperiment-method	QFeatures-aggregate
AllGenerics	AllGenerics
AssayLink	AssayLinks
assayLink	AssayLinks
AssayLink-class	AssayLinks
AssayLinks	AssayLinks
assayLinks	AssayLinks
AssayLinks-class	AssayLinks
c,QFeatures-method	QFeatures-class
CharacterVariableFilter	QFeatures-filtering
CharacterVariableFilter-class	QFeatures-filtering
class:AssayLink	AssayLinks
class:AssayLinks	AssayLinks
class:QFeatures	QFeatures-class
coerce,MultiAssayExperiment,QFeatures-method	QFeatures-class
coerce-QFeatures	QFeatures-class
countUniqueFeatures	countUniqueFeatures
createPrecursorId	createPrecursorId
dims,QFeatures-method	QFeatures-class
display	display
dropEmptyAssays	QFeatures-class
expandDataFrame	reduceDataFrame
feat1	feat1
feat2	feat1
feat3	feat3
feat4	feat4
filterFeatures	QFeatures-filtering
filterFeatures,QFeatures,AnnotationFilter-method	QFeatures-filtering
filterFeatures,QFeatures,formula-method	QFeatures-filtering
filterNA	QFeatures-missing-data
filterNA,QFeatures-method	QFeatures-missing-data
filterNA,SummarizedExperiment-method	QFeatures-missing-data
ft_na	feat1
getQFeaturesType	QFeatures-type
hlpsms	hlpsms
impute	impute
impute,QFeatures-method	impute
impute,SummarizedExperiment-method	impute
infIsNA	QFeatures-missing-data
infIsNA,QFeatures,character-method	QFeatures-missing-data
infIsNA,QFeatures,integer-method	QFeatures-missing-data
infIsNA,QFeatures,missing-method	QFeatures-missing-data
infIsNA,QFeatures,numeric-method	QFeatures-missing-data
infIsNA,SummarizedExperiment,missing-method	QFeatures-missing-data
isDuplicated	QFeatures-filtering
joinAssays	joinAssays
logTransform	QFeatures-processing
logTransform,QFeatures-method	QFeatures-processing
logTransform,SummarizedExperiment-method	QFeatures-processing
longForm	QFeatures-longForm
longForm,QFeatures	QFeatures-longForm
longForm,QFeatures-method	QFeatures-longForm
longForm,SummarizedExperiment	QFeatures-longForm
longForm,SummarizedExperiment-method	QFeatures-longForm
longFormat	QFeatures-longForm
missing-data	QFeatures-missing-data
names<-,QFeatures,character-method	QFeatures-class
ncols,QFeatures-method	QFeatures-class
nNA	QFeatures-missing-data
nNA,QFeatures,character-method	QFeatures-missing-data
nNA,QFeatures,integer-method	QFeatures-missing-data
nNA,QFeatures,missing-method	QFeatures-missing-data
nNA,QFeatures,numeric-method	QFeatures-missing-data
nNA,SummarizedExperiment,missing-method	QFeatures-missing-data
normalize	QFeatures-processing
normalize,QFeatures-method	QFeatures-processing
normalize,SummarizedExperiment-method	QFeatures-processing
normalizeMethods	QFeatures-processing
nrows,QFeatures-method	QFeatures-class
NumericVariableFilter	QFeatures-filtering
NumericVariableFilter-class	QFeatures-filtering
plot.QFeatures	QFeatures-class
QFeatures	QFeatures-class
QFeatures-class	QFeatures-class
QFeatures-filtering	QFeatures-filtering
QFeatures-processing	QFeatures-processing
QFeatures-type	QFeatures-type
rbindRowData	QFeatures-class
readQFeatures	readQFeatures
readQFeatures,data.frame,data.frame	readQFeatures
readQFeatures,data.frame,vector	readQFeatures
readQFeatures,missing,vector	readQFeatures
readQFeaturesFromDIANN	readQFeaturesFromDIANN
readSummarizedExperiment	readQFeatures
reduceDataFrame	reduceDataFrame
removeAssay	QFeatures-class
replaceAssay	QFeatures-class
replaceColnames	QFeatures-class
rowData,QFeatures-method	QFeatures-class
rowData<-,QFeatures,ANY-method	QFeatures-class
rowData<-,QFeatures,DataFrameList-method	QFeatures-class
rowDataNames	QFeatures-class
scaleTransform	QFeatures-processing
scaleTransform,QFeatures-method	QFeatures-processing
scaleTransform,SummarizedExperiment-method	QFeatures-processing
selectRowData	QFeatures-class
setQFeaturesType	QFeatures-type
se_na2	feat1
show,AssayLink-method	AssayLinks
show,QFeatures-method	QFeatures-class
subsetByFeature	QFeatures-subsetBy
subsetByFeature,QFeatures,character-method	QFeatures-subsetBy
sweep	QFeatures-processing
sweep,QFeatures-method	QFeatures-processing
sweep,SummarizedExperiment-method	QFeatures-processing
unfoldDataFrame	unfoldDataFrame
updateObject,AssayLink-method	AssayLinks
updateObject,AssayLinks-method	AssayLinks
updateObject,QFeatures-method	QFeatures-class
validQFeaturesTypes	QFeatures-type
VariableFilter	QFeatures-filtering
zeroIsNA	QFeatures-missing-data
zeroIsNA,QFeatures,character-method	QFeatures-missing-data
zeroIsNA,QFeatures,integer-method	QFeatures-missing-data
zeroIsNA,QFeatures,missing-method	QFeatures-missing-data
zeroIsNA,QFeatures,numeric-method	QFeatures-missing-data
zeroIsNA,SummarizedExperiment,missing-method	QFeatures-missing-data
[,AssayLink,character,ANY,ANY-method	AssayLinks
[,AssayLink,character-method	AssayLinks
[,AssayLinks,character-method	AssayLinks
[,AssayLinks,list,ANY,ANY-method	AssayLinks
[,QFeatures,ANY,ANY,ANY-method	QFeatures-class
[,QFeatures,character,ANY,ANY-method	QFeatures-class
[[<-,QFeatures,ANY,ANY-method	QFeatures-class
