R: Repetitive Element Methylation Prediction

# Repetitive Element Methylation Prediction

## Documentation for package ‘REMP’ version 1.36.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

REMP-package | Repetitive Element Methylation Prediction
Alu.hg19.demo | Subset of Alu genomic location dataset (hg19)
Alu.hg38.demo | Subset of Alu genomic location dataset (hg38)
decodeAnnot | REMProduct instances
decodeAnnot-method | REMProduct instances
details | REMProduct instances
details-method | REMProduct instances
fetchRefSeqGene | Get RefSeq gene database
fetchRMSK | Get RE database from RepeatMasker
findRECpG | Find RE-CpG genomic location given RE ranges information
getBackend | Get BiocParallel back-end
getGM12878 | Get methylation data of HapMap LCL sample GM12878 profiled by Illumina 450k array or EPIC array
getILMN | REMParcel instances
getILMN-method | REMParcel instances
getParcelInfo | REMParcel instances
getParcelInfo-method | REMParcel instances
getRE | REMParcel instances
getRE-method | REMParcel instances
getRECpG | REMParcel instances
getRECpG-method | REMParcel instances
getRefGene | REMParcel instances
getRefGene-method | REMParcel instances
GRannot | Annotate genomic ranges data with gene region information.
grooMethy | Groom methylation data to fix potential data issues
initREMP | RE Annotation Database Initialization
REMP | Repetitive Element Methylation Prediction
remp | Repetitive element methylation prediction
rempAggregate | REMProduct instances
rempAggregate-method | REMProduct instances
rempAnnot | REMProduct instances
rempAnnot-method | REMProduct instances
REMParcel | REMParcel instances
REMParcel-class | REMParcel instances
rempB | REMProduct instances
rempB-method | REMProduct instances
rempCombine | REMProduct instances
rempCombine-method | REMProduct instances
rempImp | REMProduct instances
rempImp-method | REMProduct instances
remplot | REMProduct instances
remplot-method | REMProduct instances
rempM | REMProduct instances
rempM-method | REMProduct instances
rempQC | REMProduct instances
rempQC-method | REMProduct instances
REMProduct | REMProduct instances
REMProduct-class | REMProduct instances
remprofile | Extract DNA methylation data profiled in RE
rempStats | REMProduct instances
rempStats-method | REMProduct instances
rempTemplate | Prepare data template for REMP
rempTrim | REMProduct instances
rempTrim-method | REMProduct instances
remp_options | Set or get options for REMP package
remp_reset | Set or get options for REMP package
saveParcel | REMParcel instances
saveParcel-method | REMParcel instances