# Generated by roxygen2: do not edit by hand

S3method(RUVNaiveRidge,default)
S3method(RUVNaiveRidge,simulateGEdata)
S3method(empNegativeControls,default)
S3method(empNegativeControls,simulateGEdata)
S3method(plot,optimizeParameters)
S3method(print,simulateGEdata)
export(ECDFPlot)
export(PCAPlot)
export(RLEPlot)
export(RUVNaiveRidge)
export(assessQuality)
export(background)
export(calculateThreshold)
export(compareRanks)
export(correlationPlot)
export(eigenvaluePlot)
export(empNegativeControls)
export(findWeights)
export(genePlot)
export(histogramPlot)
export(is.Threshold)
export(is.Weights)
export(is.optimizeParameters)
export(is.simulateGEdata)
export(optimizeParameters)
export(plotDesign)
export(plotThreshold)
export(prioritise)
export(simulateGEdata)
export(wcor)
exportClasses(Threshold)
exportClasses(Weights)
exportClasses(optimizeParameters)
exportClasses(simulateGEdata)
exportMethods(RUVNaiveRidge)
exportMethods(empNegativeControls)
exportMethods(simulateGEdata)
import(BiocParallel)
import(bladderbatch)
import(corrplot)
import(grDevices)
import(lattice)
import(psych)
import(snowfall)
importFrom(MASS,mvrnorm)
importFrom(graphics,abline)
importFrom(graphics,boxplot)
importFrom(graphics,hist)
importFrom(graphics,image)
importFrom(graphics,layout)
importFrom(graphics,legend)
importFrom(graphics,lines)
importFrom(graphics,mtext)
importFrom(graphics,par)
importFrom(graphics,plot)
importFrom(graphics,plot.new)
importFrom(graphics,points)
importFrom(graphics,rect)
importFrom(grid,grid.points)
importFrom(gridExtra,grid.arrange)
importFrom(reshape2,melt)
importFrom(stats,cor)
importFrom(stats,density)
importFrom(stats,ecdf)
importFrom(stats,loess)
importFrom(stats,median)
importFrom(stats,prcomp)
importFrom(stats,rnorm)
importFrom(stats,runif)
importFrom(stats,var)
importFrom(stats,xtabs)
