TPP_importCheckConfigTable
                        Import and chech configuration table
annotateDataList        Annotate imported data list using a config
                        table
bootstrapNull           Bootstrap null distribution of F statistics for
                        FDR estimation
bootstrapNullAlternativeModel
                        Bootstrap null distribution of F statistics for
                        FDR estimation based on resampling alternative
                        model residuals
bootstrapNullAlternativeModelFast
                        Bootstrap null distribution of F statistics for
                        FDR estimation based on resampling alternative
                        model residuals with only one round of model
                        fitting on resampled data and subsequent
                        resampling of thereby obtained residuals
competeModels           Compete H0 and H1 models per protein and obtain
                        F statistic
computeFStatFromParams
                        Compute F statistics from paramter data frame
computeFstat            Compute F statistic from H1 and H0 model
                        characteristics
configWide2Long         Tranform configuration table from wide to long
config_tab              Example config table for a import of a
                        simulated 2D-TPP cell extract dataset
filterOutContaminants   Filter out contaminants
findHits                Find hits according to FDR threshold
fitAndEvalDataset       Fit H0 and H1 model to 2D thermal profiles of
                        proteins and compute F statistic
fitH0Model              Fit H0 model and evaluate fit statistics
fitH1Model              Fit H1 model and evaluate fit statistics
getFDR                  Get FDR for given F statistics based on true
                        and null dataset
getModelParamsDf        Get H0 and H1 model parameters
getPEC504Temperature    Get pEC50 for a protein of interest at a
                        specific temperatures (optimally the melting
                        point of the protein)
getPvalues              Compute p-values for given F statistics based
                        on true and null dataset
gg_qq                   Plot qq-plot of true data and bootstrapped null
                        with ggplot
import2dDataset         Import 2D-TPP dataset using a config table
import2dMain            Import 2D-TPP dataset main function
plot2dTppFcHeatmap      Plot heatmap of 2D thermal profile fold changes
                        of a protein of choice
plot2dTppFit            Plot H0 or H1 fit of 2D thermal profile
                        intensities of a protein of choice
plot2dTppProfile        Plot 2D thermal profile intensities of a
                        protein of choice
plot2dTppRelProfile     Plot 2D thermal profile ratios of a protein of
                        choice
plot2dTppVolcano        Plot Volcano plot of TPP2D results
raw_dat_list            Example raw data for a subset of a simulated
                        2D-TPP cell extract dataset
recomputeSignalFromRatios
                        Recompute robust signal intensities based on
                        bootstrapped TMT channel ratios
renameColumns           Rename columns of imported data frame
resolveAmbiguousProteinNames
                        Resolve ambiguous protein names
runTPP2D                Run complete TPP2D analysis
simulated_cell_extract_df
                        Example subset of a simulated 2D-TPP cell
                        extract dataset
tpp2dExperiment-class   S4 TPP2D Experiment Class
