Package: XeniumIO
Type: Package
Title: Import and represent Xenium data from the 10X Xenium Analyzer
Version: 1.4.0
Authors@R: c(
    person("Marcel", "Ramos", , "marcel.ramos@sph.cuny.edu", c("aut", "cre"),
        c(ORCID = "0000-0002-3242-0582")
    ),
    person("Dario", "Righelli", role = "ctb"),
    person("Estella", "Dong", role = "ctb"),
    person("NCI", role = "fnd", comment = c(GrantNo. = "U24CA289073"))
    )
Description: The package allows users to readily import spatial data
    obtained from the 10X Xenium Analyzer pipeline. Supported formats include
    'parquet', 'h5', and 'mtx' files. The package mainly represents data
    as SpatialExperiment objects.
License: Artistic-2.0
Depends: TENxIO, R (>= 4.5.0)
Imports: BiocBaseUtils, BiocGenerics, BiocIO, jsonlite, methods,
        S4Vectors, SingleCellExperiment, SpatialExperiment,
        SummarizedExperiment, VisiumIO (>= 1.7.5)
Suggests: arrow, BiocFileCache, BiocStyle, knitr, rmarkdown, tinytest
biocViews: Software, Infrastructure, DataImport, SingleCell, Spatial
VignetteBuilder: knitr
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.3
BugReports: https://github.com/waldronlab/XeniumIO/issues
URL: https://github.com/waldronlab/XeniumIO
Collate: 'XeniumFile.R' 'TENxXenium-class.R' 'XeniumIO-package.R'
        'utilities.R'
Date: 2025-12-11
git_url: https://git.bioconductor.org/packages/XeniumIO
git_branch: RELEASE_3_23
git_last_commit: 0b57715
git_last_commit_date: 2026-04-28
Repository: Bioconductor 3.23
Date/Publication: 2026-04-28
NeedsCompilation: no
Packaged: 2026-04-28 23:53:53 UTC; biocbuild
Author: Marcel Ramos [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-3242-0582>),
  Dario Righelli [ctb],
  Estella Dong [ctb],
  NCI [fnd] (GrantNo.: U24CA289073)
Maintainer: Marcel Ramos <marcel.ramos@sph.cuny.edu>
Built: R 4.6.0; ; 2026-04-29 05:05:33 UTC; unix
