affycoretools	affycoretools
affycoretools-defunct	affycoretools-defunct
affyLinks	entrezLinks
affystart	affystart
annBM	affycoretools-defunct
annotateEset	annotateEset
annotateEset,ExpressionSet,AffyExonPDInfo-method	annotateEset
annotateEset,ExpressionSet,AffyExpressionPDInfo-method	annotateEset
annotateEset,ExpressionSet,AffyGenePDInfo-method	annotateEset
annotateEset,ExpressionSet,AffyHTAPDInfo-method	annotateEset
annotateEset,ExpressionSet,character-method	annotateEset
annotateEset,ExpressionSet,ChipDb-method	annotateEset
annotateEset,ExpressionSet,data.frame-method	annotateEset
dataAndHeatmapPage	dataAndHeatmapPage
doGlimma	doGlimma
ensemblLinks	entrezLinks
entrezLinks	entrezLinks
fixHeaderAndGo	fixHeaderAndGo
foldFilt	affycoretools-defunct
foldFiltBM	affycoretools-defunct
geneSetPage	geneSetPage
getCols	getCols
getMainProbes	getMainProbes
goLinks	entrezLinks
gsHeatmap	gsHeatmap
hyperG2annaffy	affycoretools-defunct
hyperGoutput	affycoretools-defunct
intNames	intNames
limma2annaffy	affycoretools-defunct
limma2biomaRt	affycoretools-defunct
make.cl	make.cl
makeGoGeneTable	makeGoGeneTable
makeGoTable	makeGoTable
makeHmap	makeHmap
makeImages	makeImages
makeIndices	makeIndices
makeVenn	makeVenn
makeVenn,DGEGLM-method	makeVenn
makeVenn,MArrayLM-method	makeVenn
maplot	maplot
mirna2mrna	mirna2mrna
nuccoreLinks	entrezLinks
outputRomer	outputRomer
outputRomer,DGEList,DGEGLM-method	outputRomer
outputRomer,EList,MArrayLM-method	outputRomer
outputRomer,ExpressionSet,MArrayLM-method	outputRomer
pca.legend	pca.legend
plotDeg	plotDeg
plotHist	plotDeg
plotPCA	plotPCA
plotPCA,ExpressionSet-method	plotPCA
plotPCA,matrix-method	plotPCA
probes2table	affycoretools-defunct
probes2tableBM	affycoretools-defunct
runRomer	runRomer
runRomer,DGEList-method	runRomer
runRomer,EList-method	runRomer
runRomer,ExpressionSet-method	runRomer
tableFilt	tableFilt
venn4Way	venn4Way
vennCounts2	vennCounts2
vennInLine	vennInLine
vennPage	vennPage
vennSelect	affycoretools-defunct
vennSelect2	vennSelect2
vennSelectBM	affycoretools-defunct
vennSelectFC	affycoretools-defunct
writeFit	writeFit
