Package: fcScan
Type: Package
Title: fcScan for detecting clusters of coordinates with user defined
        options
Version: 1.26.0
biocViews: GenomeAnnotation, Clustering
Authors@R: c(
    person("Abdullah", "El-Kurdi", email="ak161@aub.edu.lb", role = c("aut")),
    person("Ghiwa", "khalil", email="gk39@aub.edu.lb", role=c("aut")),
    person("Georges", "Khazen" ,email="gkhazen@lau.edu.lb", role=c("ctb")),
    person("Pierre", "Khoueiry", email="pk17@aub.edu.lb", role=c("aut","cre")))
Maintainer: Pierre Khoueiry <pk17@aub.edu.lb> Abdullah El-Kurdi <ak161@aub.edu.lb>
Description: This package is used to detect combination of genomic coordinates falling within a user defined window size along with user defined overlap between identified neighboring clusters. It can be used for genomic data where the clusters are built on a specific chromosome or specific strand. Clustering can be performed with a "greedy" option allowing thus the presence of additional sites within the allowed window size.
License: Artistic-2.0
Encoding: UTF-8
Imports: stats, plyr, VariantAnnotation, SummarizedExperiment,
        rtracklayer, GenomicRanges, methods, IRanges, foreach,
        doParallel, parallel
VignetteBuilder: knitr
Suggests: RUnit, BiocGenerics, BiocStyle, knitr, rmarkdown
RoxygenNote: 6.1.0
git_url: https://git.bioconductor.org/packages/fcScan
git_branch: RELEASE_3_23
git_last_commit: 663fe9f
git_last_commit_date: 2026-04-28
Repository: Bioconductor 3.23
Date/Publication: 2026-04-28
NeedsCompilation: no
Packaged: 2026-04-28 22:09:08 UTC; biocbuild
Author: Abdullah El-Kurdi [aut],
  Ghiwa khalil [aut],
  Georges Khazen [ctb],
  Pierre Khoueiry [aut, cre]
Built: R 4.6.0; ; 2026-04-29 04:42:42 UTC; unix
