R: Combining multitube flow cytometry data by binning

# Combining multitube flow cytometry data by binning

## Documentation for package ‘flowBin’ version 1.48.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS

## Help Pages

flowbin-package | function to run the entire flowBin pipeline
aml.sample | Multitube AML sample as example data for flowBin
amlsample | Multitube AML sample as example data for flowBin
bin.labels | A 'FlowSample', but with binning information for each tube
bin.labels-method | A 'FlowSample', but with binning information for each tube
bin.labels<- | A 'FlowSample', but with binning information for each tube
bin.labels<--method | A 'FlowSample', but with binning information for each tube
bin.pars | A class similar to flowSet, but with extra information needed by flowBin
bin.pars-method | A class similar to flowSet, but with extra information needed by flowBin
bin.pars<- | A class similar to flowSet, but with extra information needed by flowBin
bin.pars<--method | A class similar to flowSet, but with extra information needed by flowBin
BinnedFlowSample | A 'FlowSample', but with binning information for each tube
BinnedFlowSample-class | A 'FlowSample', but with binning information for each tube
checkQNorm | Function to check the quantile normalisation of a FlowSample using flowFP
checkQNorm, | Function to check the quantile normalisation of a FlowSample using flowFP
checkQNorm-method | Function to check the quantile normalisation of a FlowSample using flowFP
control.tubes | A class similar to flowSet, but with extra information needed by flowBin
control.tubes-method | A class similar to flowSet, but with extra information needed by flowBin
control.tubes<- | A class similar to flowSet, but with extra information needed by flowBin
control.tubes<--method | A class similar to flowSet, but with extra information needed by flowBin
eventsInBins | Count number of events for each tube in each bin
eventsInBins-method | Count number of events for each tube in each bin
flowBin | function to run the entire flowBin pipeline
flowFPBin | Bin sample using flowFP binning
flowFPBin-method | Bin sample using flowFP binning
FlowSample | A class similar to flowSet, but with extra information needed by flowBin
FlowSample-class | A class similar to flowSet, but with extra information needed by flowBin
getBinExpr | Calculate the expression of each bin in a BinnedFlowSample in terms of the measurement markers
getBinExpr-method | Calculate the expression of each bin in a BinnedFlowSample in terms of the measurement markers
kMeansBin | Bin sample using K-means binning
kMeansBin-method | Bin sample using K-means binning
mapBinsKNN | Internal function to map bins by KNN
mapBinsKNN-method | Internal function to map bins by KNN
measure.pars | A class similar to flowSet, but with extra information needed by flowBin
measure.pars-method | A class similar to flowSet, but with extra information needed by flowBin
measure.pars<- | A class similar to flowSet, but with extra information needed by flowBin
measure.pars<--method | A class similar to flowSet, but with extra information needed by flowBin
name | A class similar to flowSet, but with extra information needed by flowBin
name-method | A class similar to flowSet, but with extra information needed by flowBin
name<- | A class similar to flowSet, but with extra information needed by flowBin
name<--method | A class similar to flowSet, but with extra information needed by flowBin
quantileNormalise | quantileNormalise normalise binning paramaters across all tubes of a flowSample
quantileNormalise-method | quantileNormalise normalise binning paramaters across all tubes of a flowSample
removeSparseBins | Remove bins from a BinnedFlowSample with few events in them
removeSparseBins-method | Remove bins from a BinnedFlowSample with few events in them
show-method | A class similar to flowSet, but with extra information needed by flowBin
show-method | Methods to view flowBin objects
show-methods | Methods to view flowBin objects
tube.set | A class similar to flowSet, but with extra information needed by flowBin
tube.set-method | A class similar to flowSet, but with extra information needed by flowBin
tube.set<- | A class similar to flowSet, but with extra information needed by flowBin
tube.set<--method | A class similar to flowSet, but with extra information needed by flowBin